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Comment: C: TxDb.Hsapiens.UCSC.hg19.knownGene Exons that are not part of any gene
6.4 years ago Aliaksei Holik ▴ 350
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Beadarray import of iScan generated Illumina gene expression data
Microarray GO ChipName beadarray Microarray GO ChipName beadarray
updated 6.4 years ago by • 0 • written 10.6 years ago by ▴ 350
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Comment: C: TxDb.Hsapiens.UCSC.hg19.knownGene Exons that are not part of any gene
6.4 years ago Aliaksei Holik ▴ 350
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5
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1.3k
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TxDb.Hsapiens.UCSC.hg19.knownGene Exons that are not part of any gene
TxDb.Hsapiens.UCSC.hg19.knownGene genomicfeatures annotation
6.4 years ago Aliaksei Holik ▴ 350
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Comment: C: Efficiently finding a relative position inside a GRanges object
6.5 years ago Aliaksei Holik ▴ 350
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Efficiently finding a relative position inside a GRanges object
genomicranges
6.6 years ago • updated 6.5 years ago Aliaksei Holik ▴ 350
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Comment: C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
6.9 years ago Aliaksei Holik ▴ 350
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Answer: A: Gviz: plotting mean values of biological replicates
7.0 years ago Aliaksei Holik ▴ 350
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Answer: A: Gene set analysis with CAMERA
7.7 years ago Aliaksei Holik ▴ 350
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Comment: C: "Normalising" GRanges coverage object
7.9 years ago Aliaksei Holik ▴ 350
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"Normalising" GRanges coverage object
Coverage GO Gviz Coverage GO Gviz
updated 7.9 years ago by 7.8k • written 7.9 years ago by ▴ 350
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Comment: C: Gviz AnnotationTrack - Consistent y-scales
8.2 years ago Aliaksei Holik ▴ 350
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Gviz AnnotationTrack - Consistent y-scales
Coverage Annotation graph Gviz Coverage Annotation graph Gviz
updated 8.2 years ago by ▴ 130 • written 8.2 years ago by ▴ 350
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Answer: A: RNA seq
8.2 years ago Aliaksei Holik ▴ 350
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Answer: A: strsplit
8.3 years ago Aliaksei Holik ▴ 350
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Answer: A: Using gene symbols as labels for heatmap instead of microarray ID
8.5 years ago Aliaksei Holik ▴ 350
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3.7k
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Comment: C: SmearPlot edgeR - adding gene names to genes of interest
8.5 years ago Aliaksei Holik ▴ 350
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3.7k
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Comment: C: SmearPlot edgeR - adding gene names to genes of interest
8.5 years ago Aliaksei Holik ▴ 350
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Answer: A: SmearPlot edgeR - adding gene names to genes of interest
8.5 years ago Aliaksei Holik ▴ 350
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863
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Comment: C: Generating GEO submission files from beadarray summary data
8.6 years ago Aliaksei Holik ▴ 350
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863
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Comment: C: Generating GEO submission files from beadarray summary data
8.6 years ago Aliaksei Holik ▴ 350
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863
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Answer: A: Generating GEO submission files from beadarray summary data
8.6 years ago Aliaksei Holik ▴ 350
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Comment: C: Measuring shifts in intronic expression independently of exons
8.8 years ago Aliaksei Holik ▴ 350
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Comment: C: Doubt on time course design
8.9 years ago Aliaksei Holik ▴ 350
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652
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Answer: A: Doubt on time course design
8.9 years ago Aliaksei Holik ▴ 350
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Comment: C: Generating GEO submission files from beadarray summary data
9.7 years ago Aliaksei Holik ▴ 350
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957
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Comment: C: Error, while using produceGEOSampleInfoTemplate
9.7 years ago Aliaksei Holik ▴ 350
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2
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957
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Error, while using produceGEOSampleInfoTemplate
beadarray lumi PROMISE beadarray lumi PROMISE
updated 9.7 years ago by ★ 4.2k • written 9.7 years ago by ▴ 350
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Comment: C: rna-seq
9.7 years ago Aliaksei Holik ▴ 350
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1
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741
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Comment: C: rna-seq
9.7 years ago Aliaksei Holik ▴ 350
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741
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Answer: A: rna-seq
9.7 years ago Aliaksei Holik ▴ 350
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886
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Comment: C: Analysis of public GEO datasets - NGS
9.8 years ago Aliaksei Holik ▴ 350
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886
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Answer: A: Analysis of public GEO datasets - NGS
9.8 years ago Aliaksei Holik ▴ 350
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1.3k
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Comment: C: good news and bad news
9.9 years ago Aliaksei Holik ▴ 350
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1.4k
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Answer: A: Gene enrichment question
9.9 years ago Aliaksei Holik ▴ 350
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858
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Answer: A: extracting specific columns in R
9.9 years ago Aliaksei Holik ▴ 350
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3
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1.3k
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Good microarray analysis books
updated 10.2 years ago by ▴ 10 • written 10.2 years ago by ▴ 350
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Comment: C: Good microarray analysis books
10.2 years ago Aliaksei Holik ▴ 350
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1
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654
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Comment: C: Combining raw images and locs files from different scans
10.5 years ago Aliaksei Holik ▴ 350
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3
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654
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Combining raw images and locs files from different scans
convert convert
updated 10.5 years ago by ★ 5.6k • written 10.5 years ago by ▴ 350
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