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Comment: C: TxDb.Hsapiens.UCSC.hg19.knownGene Exons that are not part of any gene
8.9 years ago Aliaksei Holik ▴ 350
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Beadarray import of iScan generated Illumina gene expression data
Microarray GO ChipName beadarray Microarray GO ChipName beadarray
updated 8.9 years ago by • 0 • written 13.1 years ago by ▴ 350
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Comment: C: TxDb.Hsapiens.UCSC.hg19.knownGene Exons that are not part of any gene
8.9 years ago Aliaksei Holik ▴ 350
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TxDb.Hsapiens.UCSC.hg19.knownGene Exons that are not part of any gene
TxDb.Hsapiens.UCSC.hg19.knownGene genomicfeatures annotation
8.9 years ago Aliaksei Holik ▴ 350
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Comment: C: Efficiently finding a relative position inside a GRanges object
9.1 years ago Aliaksei Holik ▴ 350
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Efficiently finding a relative position inside a GRanges object
genomicranges
9.1 years ago Aliaksei Holik ▴ 350
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Comment: C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
9.5 years ago Aliaksei Holik ▴ 350
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Answer: A: Gviz: plotting mean values of biological replicates
9.5 years ago Aliaksei Holik ▴ 350
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Answer: A: Gene set analysis with CAMERA
10.2 years ago Aliaksei Holik ▴ 350
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Comment: C: "Normalising" GRanges coverage object
10.4 years ago Aliaksei Holik ▴ 350
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"Normalising" GRanges coverage object
Coverage GO Gviz Coverage GO Gviz
updated 10.4 years ago by ★ 7.9k • written 10.4 years ago by ▴ 350
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Comment: C: Gviz AnnotationTrack - Consistent y-scales
10.7 years ago Aliaksei Holik ▴ 350
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Gviz AnnotationTrack - Consistent y-scales
Coverage Annotation graph Gviz Coverage Annotation graph Gviz
updated 10.7 years ago by ▴ 130 • written 10.7 years ago by ▴ 350
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Answer: A: RNA seq
10.7 years ago Aliaksei Holik ▴ 350
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Answer: A: strsplit
10.8 years ago Aliaksei Holik ▴ 350
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Answer: A: Using gene symbols as labels for heatmap instead of microarray ID
11.0 years ago Aliaksei Holik ▴ 350
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Comment: C: SmearPlot edgeR - adding gene names to genes of interest
11.1 years ago Aliaksei Holik ▴ 350
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Comment: C: SmearPlot edgeR - adding gene names to genes of interest
11.1 years ago Aliaksei Holik ▴ 350
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Answer: A: SmearPlot edgeR - adding gene names to genes of interest
11.1 years ago Aliaksei Holik ▴ 350
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Comment: C: Generating GEO submission files from beadarray summary data
11.1 years ago Aliaksei Holik ▴ 350
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Comment: C: Generating GEO submission files from beadarray summary data
11.1 years ago Aliaksei Holik ▴ 350
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Answer: A: Generating GEO submission files from beadarray summary data
11.1 years ago Aliaksei Holik ▴ 350
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Comment: C: Measuring shifts in intronic expression independently of exons
11.4 years ago Aliaksei Holik ▴ 350
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Comment: C: Doubt on time course design
11.5 years ago Aliaksei Holik ▴ 350
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Answer: A: Doubt on time course design
11.5 years ago Aliaksei Holik ▴ 350
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Comment: C: Generating GEO submission files from beadarray summary data
12.3 years ago Aliaksei Holik ▴ 350
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Comment: C: Error, while using produceGEOSampleInfoTemplate
12.3 years ago Aliaksei Holik ▴ 350
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Error, while using produceGEOSampleInfoTemplate
beadarray lumi PROMISE beadarray lumi PROMISE
updated 12.3 years ago by ★ 4.2k • written 12.3 years ago by ▴ 350
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Comment: C: rna-seq
12.3 years ago Aliaksei Holik ▴ 350
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Comment: C: rna-seq
12.3 years ago Aliaksei Holik ▴ 350
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Answer: A: rna-seq
12.3 years ago Aliaksei Holik ▴ 350
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Comment: C: Analysis of public GEO datasets - NGS
12.3 years ago Aliaksei Holik ▴ 350
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Answer: A: Analysis of public GEO datasets - NGS
12.3 years ago Aliaksei Holik ▴ 350
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Comment: C: good news and bad news
12.4 years ago Aliaksei Holik ▴ 350
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Answer: A: Gene enrichment question
12.4 years ago Aliaksei Holik ▴ 350
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Answer: A: extracting specific columns in R
12.4 years ago Aliaksei Holik ▴ 350
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Good microarray analysis books
updated 12.7 years ago by ▴ 10 • written 12.7 years ago by ▴ 350
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Comment: C: Good microarray analysis books
12.7 years ago Aliaksei Holik ▴ 350
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Comment: C: Combining raw images and locs files from different scans
13.0 years ago Aliaksei Holik ▴ 350
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Combining raw images and locs files from different scans
convert convert
updated 13.0 years ago by ★ 6.6k • written 13.0 years ago by ▴ 350
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