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Comment: C: TxDb.Hsapiens.UCSC.hg19.knownGene Exons that are not part of any gene
9.6 years ago Aliaksei Holik ▴ 350
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Beadarray import of iScan generated Illumina gene expression data
Microarray GO ChipName beadarray Microarray GO ChipName beadarray
updated 9.6 years ago by • 0 • written 13.8 years ago by ▴ 350
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Comment: C: TxDb.Hsapiens.UCSC.hg19.knownGene Exons that are not part of any gene
9.6 years ago Aliaksei Holik ▴ 350
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TxDb.Hsapiens.UCSC.hg19.knownGene Exons that are not part of any gene
TxDb.Hsapiens.UCSC.hg19.knownGene genomicfeatures annotation
9.6 years ago Aliaksei Holik ▴ 350
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Comment: C: Efficiently finding a relative position inside a GRanges object
9.8 years ago Aliaksei Holik ▴ 350
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Efficiently finding a relative position inside a GRanges object
genomicranges
9.8 years ago Aliaksei Holik ▴ 350
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Comment: C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
10.2 years ago Aliaksei Holik ▴ 350
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Answer: A: Gviz: plotting mean values of biological replicates
10.2 years ago Aliaksei Holik ▴ 350
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Answer: A: Gene set analysis with CAMERA
10.9 years ago Aliaksei Holik ▴ 350
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Comment: C: "Normalising" GRanges coverage object
11.1 years ago Aliaksei Holik ▴ 350
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"Normalising" GRanges coverage object
Coverage GO Gviz Coverage GO Gviz
updated 11.1 years ago by ★ 7.9k • written 11.1 years ago by ▴ 350
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Comment: C: Gviz AnnotationTrack - Consistent y-scales
11.4 years ago Aliaksei Holik ▴ 350
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Gviz AnnotationTrack - Consistent y-scales
Coverage Annotation graph Gviz Coverage Annotation graph Gviz
updated 11.4 years ago by ▴ 130 • written 11.4 years ago by ▴ 350
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Answer: A: RNA seq
11.4 years ago Aliaksei Holik ▴ 350
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Answer: A: strsplit
11.5 years ago Aliaksei Holik ▴ 350
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Answer: A: Using gene symbols as labels for heatmap instead of microarray ID
11.7 years ago Aliaksei Holik ▴ 350
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Comment: C: SmearPlot edgeR - adding gene names to genes of interest
11.8 years ago Aliaksei Holik ▴ 350
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Comment: C: SmearPlot edgeR - adding gene names to genes of interest
11.8 years ago Aliaksei Holik ▴ 350
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Answer: A: SmearPlot edgeR - adding gene names to genes of interest
11.8 years ago Aliaksei Holik ▴ 350
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Comment: C: Generating GEO submission files from beadarray summary data
11.8 years ago Aliaksei Holik ▴ 350
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Comment: C: Generating GEO submission files from beadarray summary data
11.8 years ago Aliaksei Holik ▴ 350
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Answer: A: Generating GEO submission files from beadarray summary data
11.8 years ago Aliaksei Holik ▴ 350
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Comment: C: Measuring shifts in intronic expression independently of exons
12.0 years ago Aliaksei Holik ▴ 350
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Comment: C: Doubt on time course design
12.2 years ago Aliaksei Holik ▴ 350
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Answer: A: Doubt on time course design
12.2 years ago Aliaksei Holik ▴ 350
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Comment: C: Generating GEO submission files from beadarray summary data
13.0 years ago Aliaksei Holik ▴ 350
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Comment: C: Error, while using produceGEOSampleInfoTemplate
13.0 years ago Aliaksei Holik ▴ 350
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Error, while using produceGEOSampleInfoTemplate
beadarray lumi PROMISE beadarray lumi PROMISE
updated 13.0 years ago by ★ 4.2k • written 13.0 years ago by ▴ 350
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Comment: C: rna-seq
13.0 years ago Aliaksei Holik ▴ 350
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Comment: C: rna-seq
13.0 years ago Aliaksei Holik ▴ 350
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Answer: A: rna-seq
13.0 years ago Aliaksei Holik ▴ 350
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Comment: C: Analysis of public GEO datasets - NGS
13.0 years ago Aliaksei Holik ▴ 350
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1.9k
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Answer: A: Analysis of public GEO datasets - NGS
13.0 years ago Aliaksei Holik ▴ 350
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Comment: C: good news and bad news
13.1 years ago Aliaksei Holik ▴ 350
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Answer: A: Gene enrichment question
13.1 years ago Aliaksei Holik ▴ 350
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Answer: A: extracting specific columns in R
13.1 years ago Aliaksei Holik ▴ 350
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Good microarray analysis books
updated 13.4 years ago by ▴ 10 • written 13.4 years ago by ▴ 350
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Comment: C: Good microarray analysis books
13.4 years ago Aliaksei Holik ▴ 350
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Comment: C: Combining raw images and locs files from different scans
13.7 years ago Aliaksei Holik ▴ 350
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1.2k
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Combining raw images and locs files from different scans
convert convert
updated 13.7 years ago by ★ 6.6k • written 13.7 years ago by ▴ 350
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