Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
1
reply
489
views
Answer: Answer: displaying the differential expression with deseq2 over 4X2 samples with the in
11 weeks ago James W. MacDonald 68k
0
votes
0
replies
236
views
Answer: Answer: I am having issues with bowtie2_build
12 weeks ago James W. MacDonald 68k
1
vote
0
replies
511
views
Answer: Answer: Selection of correct coefficients or contrasts in DESeq2
3 months ago James W. MacDonald 68k
1
vote
1
reply
1.3k
views
Comment: Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
3 months ago James W. MacDonald 68k
0
votes
0
replies
223
views
Answer: Answer: Unable to find sample sheet file for ChAMP methylation data analysis
3 months ago James W. MacDonald 68k
0
votes
0
replies
199
views
Answer: Answer: affymetrix
3 months ago James W. MacDonald 68k
0
votes
0
replies
1.4k
views
Comment: Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
3 months ago James W. MacDonald 68k
0
votes
0
replies
1.4k
views
Comment: Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
3 months ago James W. MacDonald 68k
0
votes
1
reply
1.4k
views
Comment: Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
3 months ago James W. MacDonald 68k
3
votes
2
replies
1.4k
views
Answer: Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
3 months ago James W. MacDonald 68k
0
votes
0
replies
207
views
Answer: Answer: XCMS Data Processing
3 months ago James W. MacDonald 68k
0
votes
0
replies
1.0k
views
Comment: Comment: Error using useMart or useEnsembl
3 months ago James W. MacDonald 68k
0
votes
1
reply
1.0k
views
Answer: Answer: Error using useMart or useEnsembl
3 months ago James W. MacDonald 68k
2
votes
0
replies
633
views
Answer: Answer: Error in download.file for TCGAutils::symbolsToRanges
3 months ago James W. MacDonald 68k
0
votes
0
replies
1.2k
views
Comment: Comment: Biomart and ensembl not working?
3 months ago James W. MacDonald 68k
0
votes
1
reply
1.2k
views
Answer: Answer: Biomart and ensembl not working?
3 months ago James W. MacDonald 68k
0
votes
0
replies
195
views
Answer: Answer: Unknown gene transcripts after annotatr
3 months ago James W. MacDonald 68k
0
votes
0
replies
602
views
Answer: Answer: DESeq2 Heatmap
3 months ago James W. MacDonald 68k
0
votes
0
replies
188
views
Answer: Answer: Improve performance of qusage aggregateGeneSet
3 months ago James W. MacDonald 68k
0
votes
0
replies
174
views
Answer: Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000
3 months ago James W. MacDonald 68k
0
votes
0
replies
599
views
Comment: Comment: iam not able to do retrive data using GEOquery R package
3 months ago James W. MacDonald 68k
0
votes
1
reply
599
views
Answer: Answer: iam not able to do retrive data using GEOquery R package
3 months ago James W. MacDonald 68k
0
votes
0
replies
1.1k
views
Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
3 months ago James W. MacDonald 68k
0
votes
0
replies
291
views
Answer: Answer: Installation error for Rsamtools.
3 months ago James W. MacDonald 68k
0
votes
0
replies
1.1k
views
Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
3 months ago James W. MacDonald 68k
1
vote
1
reply
1.1k
views
Answer: Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
3 months ago James W. MacDonald 68k
0
votes
0
replies
1.2k
views
Comment: Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D
3 months ago James W. MacDonald 68k
0
votes
0
replies
1.2k
views
Comment: Comment: Deseq2, enrichGO and ensembl ID
3 months ago James W. MacDonald 68k
0
votes
1
reply
1.2k
views
Answer: Answer: Why did PCA plots look exactly the same after adjusting for batch covariate in D
3 months ago James W. MacDonald 68k
0
votes
1
reply
381
views
Comment: Comment: Newbie Question - adding metadata to an analysis
3 months ago James W. MacDonald 68k
0
votes
1
reply
461
views
Answer: Answer: Diffbind interpretation of data - fold change
3 months ago James W. MacDonald 68k
0
votes
0
replies
314
views
Answer: Answer: No preprocessing allowed for EPICv2 with DMRcate
3 months ago James W. MacDonald 68k
0
votes
0
replies
764
views
Comment: Comment: How do I fix an odd voom plot in a combined dataset?
3 months ago James W. MacDonald 68k
0
votes
1
reply
381
views
Answer: Answer: Newbie Question - adding metadata to an analysis
3 months ago James W. MacDonald 68k
0
votes
0
replies
395
views
Comment: Comment: MissMethyl failed to use gometh function for EPICv2
3 months ago James W. MacDonald 68k
0
votes
1
reply
395
views
Answer: Answer: MissMethyl failed to use gometh function for EPICv2
3 months ago James W. MacDonald 68k
0
votes
0
replies
1.1k
views
Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
4 months ago James W. MacDonald 68k
0
votes
1
reply
1.1k
views
Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
4 months ago James W. MacDonald 68k
1
vote
1
reply
2.4k
views
Comment: Comment: nightmare to make custom txdb for genomes from ToxoDB
4 months ago James W. MacDonald 68k
0
votes
1
reply
2.4k
views
Answer: Answer: nightmare to make custom txdb for genomes from ToxoDB
4 months ago James W. MacDonald 68k
0
votes
0
replies
737
views
Comment: Comment: Deseq2 Design
4 months ago James W. MacDonald 68k
0
votes
0
replies
415
views
Answer: Answer: Build error on kunpeng2 Linux aarch64
4 months ago James W. MacDonald 68k
0
votes
0
replies
2.3k
views
Comment: Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
4 months ago James W. MacDonald 68k
0
votes
1
reply
737
views
Comment: Comment: Deseq2 Design
4 months ago James W. MacDonald 68k
0
votes
0
replies
743
views
Comment: Comment: Help using rtracklayer for gene ID extraction
4 months ago James W. MacDonald 68k
1
vote
1
reply
737
views
Answer: Answer: Deseq2 Design
4 months ago James W. MacDonald 68k
0
votes
0
replies
1.2k
views
Answer: Answer: Cannot install GO.db and org.Hs.eg.db
4 months ago James W. MacDonald 68k
0
votes
2
replies
801
views
Answer: Answer: p value is 0, padj is 0
4 months ago James W. MacDonald 68k
0
votes
1
reply
743
views
Answer: Answer: Help using rtracklayer for gene ID extraction
4 months ago James W. MacDonald 68k
0
votes
0
replies
566
views
Comment: Comment: DESeq2 - Comparing Comparisons
4 months ago James W. MacDonald 68k
8,786 results • Page 2 of 176
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6