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Answer: Answer: BAM write error in HTSeqGenie
24 days ago James W. MacDonald 65k
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485
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Answer: Answer: GSVA on separate healthy and disease datasets
24 days ago James W. MacDonald 65k
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447
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Comment: Comment: Obtaining pheno data from CEL files
25 days ago James W. MacDonald 65k
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Answer: Answer: permutation test in edgeR
25 days ago James W. MacDonald 65k
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179
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Answer: Answer: How can I create a GO plot with ggpubr and clusterProfiler libraries (begginer)
25 days ago James W. MacDonald 65k
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244
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Comment: Comment: Lib sizes in the DGE object are different from original lib sizes
28 days ago James W. MacDonald 65k
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306
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Comment: Comment: Help with design.matrix
28 days ago James W. MacDonald 65k
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244
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Answer: Answer: Lib sizes in the DGE object are different from original lib sizes
28 days ago James W. MacDonald 65k
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226
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Answer: Answer: MethylKit read issue
28 days ago James W. MacDonald 65k
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306
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Answer: Answer: Help with design.matrix
28 days ago James W. MacDonald 65k
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164
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Comment: Comment: What to the log 2 fold changes mean using LRT on time course in DESeq2
28 days ago James W. MacDonald 65k
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164
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Answer: Answer: What to the log 2 fold changes mean using LRT on time course in DESeq2
28 days ago James W. MacDonald 65k
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163
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Answer: Answer: DESeq2 - Missing values in count matrix
29 days ago James W. MacDonald 65k
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427
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Comment: Comment: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
4 weeks ago James W. MacDonald 65k
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427
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Answer: Answer: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
4 weeks ago James W. MacDonald 65k
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186
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Answer: Answer: voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
4 weeks ago James W. MacDonald 65k
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447
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Comment: Comment: Obtaining pheno data from CEL files
4 weeks ago James W. MacDonald 65k
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332
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Comment: Comment: unable to access Annotationhub latest record
4 weeks ago James W. MacDonald 65k
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447
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Comment: Comment: Obtaining pheno data from CEL files
4 weeks ago James W. MacDonald 65k
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332
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Answer: Answer: unable to access Annotationhub latest record
4 weeks ago James W. MacDonald 65k
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157
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Comment: Comment: No output from read.bismark with bismark cov.files
4 weeks ago James W. MacDonald 65k
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171
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Answer: Answer: pca with VST of DESeq2 give 100% variance in PC1
4 weeks ago James W. MacDonald 65k
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141
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Answer: Answer: Multiple affymatrix IDs mapping to a single gene name
4 weeks ago James W. MacDonald 65k
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391
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Comment: Comment: Internet connection for Bioconductor packages in Rstudio in Iran...
4 weeks ago James W. MacDonald 65k
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391
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Comment: Comment: Internet connection for Bioconductor packages in Rstudio in Iran...
4 weeks ago James W. MacDonald 65k
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108
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Answer: Answer: Brachypodium distachyon db
4 weeks ago James W. MacDonald 65k
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181
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Answer: Answer: How to make GSEAplot with chip set
4 weeks ago James W. MacDonald 65k
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176
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Answer: Answer: Gene Ontology doubt
4 weeks ago James W. MacDonald 65k
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338
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Comment: Comment: fgsea fork
5 weeks ago James W. MacDonald 65k
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239
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Answer: Answer: Minfi - estimatecellscount
5 weeks ago James W. MacDonald 65k
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228
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Answer: Answer: WGCNA: analysis of complex trait associations with regressions
5 weeks ago James W. MacDonald 65k
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136
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Answer: Answer: Trimming a section of a scaffold from a genome
5 weeks ago James W. MacDonald 65k
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523
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Comment: Comment: Microarray Limma Model fitting and DEG
5 weeks ago James W. MacDonald 65k
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2
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523
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Answer: Answer: Microarray Limma Model fitting and DEG
5 weeks ago James W. MacDonald 65k
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229
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Answer: Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
5 weeks ago James W. MacDonald 65k
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174
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Answer: Answer: bioconductor emailing list
5 weeks ago James W. MacDonald 65k
2
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394
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Comment: Comment: Function 'sexp_as_cholmod_sparse' doesn't exist in the package 'Matrix'
5 weeks ago James W. MacDonald 65k
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213
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Answer: Answer: How to extract counts from a DESeq dataset ordered by a specific sample?
5 weeks ago James W. MacDonald 65k
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452
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Comment: Comment: Batch Effect Correction, Gene Filtering
6 weeks ago James W. MacDonald 65k
2
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452
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Comment: Comment: Batch Effect Correction, Gene Filtering
6 weeks ago James W. MacDonald 65k
2
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1
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452
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Answer: Answer: Batch Effect Correction, Gene Filtering
6 weeks ago James W. MacDonald 65k
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1.1k
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Comment: Comment: Issue with Biomart- cannot access ensembl
6 weeks ago James W. MacDonald 65k
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210
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Answer: Answer: Non-empty droplets versus good quality cells
6 weeks ago James W. MacDonald 65k
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390
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Comment: Comment: Unable to annotate ExpressionSet object from hugene11st chip
6 weeks ago James W. MacDonald 65k
4
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2
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229
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Answer: Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
6 weeks ago James W. MacDonald 65k
2
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258
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Answer: Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
6 weeks ago James W. MacDonald 65k
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390
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Answer: Answer: Unable to annotate ExpressionSet object from hugene11st chip
6 weeks ago James W. MacDonald 65k
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213
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Answer: Answer: Perfoming clumping using ieugwasr package
7 weeks ago James W. MacDonald 65k
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169
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Answer: Answer: problem with ClusterRepro function
7 weeks ago James W. MacDonald 65k
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431
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Comment: Comment: DESeq2 filtering vs edgeR filtering
7 weeks ago James W. MacDonald 65k
8,375 results • Page 2 of 168
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