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copy number segment calling with cn.mop when just one sample?
cn.mops cn.mops
updated 8.8 years ago by ▴ 540 • written 10.9 years ago by ▴ 750
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847
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new: Mentored Projects at Bioconductor
updated 8.9 years ago by ▴ 10 • written 11.6 years ago by ▴ 750
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855
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Answer: A: active subnetwork determination
10.2 years ago Paul Shannon ▴ 750
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1.4k
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Comment: C: biogrid cytoscape plugin
10.2 years ago Paul Shannon ▴ 750
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839
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tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small
Network Network
10.3 years ago Paul Shannon ▴ 750
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1.1k
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RCytoscape: tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small
SystemsBiology Network RCytoscape SystemsBiology Network RCytoscape
10.3 years ago Paul Shannon ▴ 750
0
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1
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1.2k
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bug in graph::addNode() w/ graph::edgeData()
graph graph
updated 10.3 years ago by ★ 3.2k • written 10.3 years ago by ▴ 750
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1.7k
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Answer: A: How to compare GO term lists and create matching network?
10.4 years ago Paul Shannon ▴ 750
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1
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1.4k
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Answer: A: bug in graph::addNode() w/ graph::edgeData()
10.5 years ago Paul Shannon ▴ 750
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1
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3.5k
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Comment: C: Directed MST (Edmond's Algorithm)
10.5 years ago Paul Shannon ▴ 750
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5
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3.2k
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getting a list of genomic sequences from a list of gene names
updated 10.8 years ago by ★ 11k • written 10.8 years ago by ▴ 750
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8
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3.1k
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QuasR: how to use an indexed reference genome?
BSgenome BSgenome genomes QuasR BSgenome BSgenome genomes QuasR
updated 10.9 years ago by ▴ 350 • written 10.9 years ago by ▴ 750
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1.4k
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Answer: A: Queries about getting annotation post-Limma analysis
10.9 years ago Paul Shannon ▴ 750
0
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2
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1.7k
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cn.mops: copy number for low-coverage bam files?
Sequencing Coverage cn.mops Sequencing Coverage cn.mops
updated 11.0 years ago by ▴ 540 • written 11.0 years ago by ▴ 750
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1.7k
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Comment: C: cn.mops: copy number for low-coverage bam files?
11.0 years ago Paul Shannon ▴ 750
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0
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882
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Answer: A: Doubt RCytoscape
11.0 years ago Paul Shannon ▴ 750
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0
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930
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Error when try VariantAnnotation filterVcf vignette example
VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation
11.0 years ago Paul Shannon ▴ 750
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1
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1.7k
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Comment: C: Visualization of metabolic network in lpSolve format
11.1 years ago Paul Shannon ▴ 750
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1
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1.1k
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5000 nodes RCytoscape
Network graph Network graph
11.1 years ago Paul Shannon ▴ 750
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1.1k
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Answer: A: 5000 nodes RCytoscape
11.1 years ago Paul Shannon ▴ 750
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0
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1.5k
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Comment: C: Quick questions about RCytoscape
11.1 years ago Paul Shannon ▴ 750
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1
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1.5k
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Answer: A: Quick questions about RCytoscape
11.1 years ago Paul Shannon ▴ 750
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1
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1.3k
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ChIPpeakAnno "examplePattern.fa" file
rGADEM MotifDb rGADEM MotifDb
updated 11.1 years ago by ▴ 80 • written 11.1 years ago by ▴ 750
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1
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1.7k
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Comment: C: Visualization of metabolic network in lpSolve format
11.1 years ago Paul Shannon ▴ 750
0
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1
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1.7k
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Answer: A: Visualization of metabolic network in lpSolve format
11.1 years ago Paul Shannon ▴ 750
0
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2
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1.0k
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Answer: A: bug in graph::edgeData()
11.2 years ago Paul Shannon ▴ 750
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0
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1.8k
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Answer: A: KEGGgraph problem
11.2 years ago Paul Shannon ▴ 750
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1
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3.0k
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Comment: C: about ComBat plot for non parametric
11.2 years ago Paul Shannon ▴ 750
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1
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3.0k
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Comment: C: about ComBat plot for non parametric
11.2 years ago Paul Shannon ▴ 750
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0
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1.2k
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Comment: C: geneid to gene name conversion
11.3 years ago Paul Shannon ▴ 750
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1
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1.2k
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Answer: A: geneid to gene name conversion
11.3 years ago Paul Shannon ▴ 750
0
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0
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891
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Answer: A: DNA motif sequence prediction - finding a method to compare with
11.3 years ago Paul Shannon ▴ 750
0
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1
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2.2k
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Answer: A: Pasilla data for "Counting with summarizeOverlaps/GenomicRanges"
11.3 years ago Paul Shannon ▴ 750
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0
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656
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Answer: A: question about KEGGSOAP package
11.3 years ago Paul Shannon ▴ 750
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0
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1.7k
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RCytoscape on Windows
Network charm RCytoscape Network charm RCytoscape
11.4 years ago Paul Shannon ▴ 750
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1
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1.3k
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Answer: A: VariantAnnotation ALT Field
11.4 years ago Paul Shannon ▴ 750
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0
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1.1k
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Answer: A: RCytoscape on Windows
11.4 years ago Paul Shannon ▴ 750
0
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2
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1.1k
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RCytoscape on Windows
RCytoscape RCytoscape
11.4 years ago Paul Shannon ▴ 750
0
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1
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1.7k
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promoter prediction
Transcription MotIV MotifDb Transcription MotIV MotifDb
updated 11.4 years ago by ▴ 380 • written 11.4 years ago by ▴ 750
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0
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1.8k
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Comment: C: KEGGgraph
11.5 years ago Paul Shannon ▴ 750
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0
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1.8k
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Answer: A: KEGGgraph
11.5 years ago Paul Shannon ▴ 750
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1
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4.9k
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Comment: C: Extend GRanges start/end
11.5 years ago Paul Shannon ▴ 750
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0
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2.6k
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Comment: C: A basic question about retrieve the absolute genome position from the output of
11.5 years ago Paul Shannon ▴ 750
1
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1
reply
4.9k
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Answer: A: Extend GRanges start/end
11.5 years ago Paul Shannon ▴ 750
0
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1
reply
2.6k
views
Comment: C: A basic question about retrieve the absolute genome position from the output of
11.5 years ago Paul Shannon ▴ 750
0
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0
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1.5k
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Answer: A: enrichment + topGO
11.6 years ago Paul Shannon ▴ 750
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0
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1.2k
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Answer: A: which R package can be used to do all the GO analysis
11.6 years ago Paul Shannon ▴ 750
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0
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1.2k
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Answer: A: which R package can be used to do all the GO analysis
11.6 years ago Paul Shannon ▴ 750
0
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0
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1.1k
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Comment: C: Mentored Projects at Bioconductor
11.6 years ago Paul Shannon ▴ 750
0
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0
replies
999
views
Answer: A: using RUnit inspect() feature in package testing
11.7 years ago Paul Shannon ▴ 750
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