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copy number segment calling with cn.mop when just one sample?
cn.mops cn.mops
updated 10.5 years ago by ▴ 540 • written 12.6 years ago by ▴ 750
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1.1k
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new: Mentored Projects at Bioconductor
updated 10.6 years ago by ▴ 10 • written 13.3 years ago by ▴ 750
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Answer: A: active subnetwork determination
11.9 years ago Paul Shannon ▴ 750
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1.8k
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Comment: C: biogrid cytoscape plugin
11.9 years ago Paul Shannon ▴ 750
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tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small
Network Network
12.0 years ago Paul Shannon ▴ 750
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1.4k
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RCytoscape: tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small
SystemsBiology Network RCytoscape SystemsBiology Network RCytoscape
12.0 years ago Paul Shannon ▴ 750
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1.6k
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bug in graph::addNode() w/ graph::edgeData()
graph graph
updated 12.0 years ago by ★ 3.4k • written 12.0 years ago by ▴ 750
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2.2k
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Answer: A: How to compare GO term lists and create matching network?
12.1 years ago Paul Shannon ▴ 750
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1.8k
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Answer: A: bug in graph::addNode() w/ graph::edgeData()
12.2 years ago Paul Shannon ▴ 750
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1
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4.5k
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Comment: C: Directed MST (Edmond's Algorithm)
12.2 years ago Paul Shannon ▴ 750
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5
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3.8k
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getting a list of genomic sequences from a list of gene names
updated 12.5 years ago by ★ 11k • written 12.5 years ago by ▴ 750
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8
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4.1k
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QuasR: how to use an indexed reference genome?
BSgenome BSgenome genomes QuasR BSgenome BSgenome genomes QuasR
updated 12.6 years ago by ▴ 350 • written 12.6 years ago by ▴ 750
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1.7k
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Answer: A: Queries about getting annotation post-Limma analysis
12.6 years ago Paul Shannon ▴ 750
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2
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2.2k
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cn.mops: copy number for low-coverage bam files?
Sequencing Coverage cn.mops Sequencing Coverage cn.mops
updated 12.7 years ago by ▴ 540 • written 12.7 years ago by ▴ 750
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2.2k
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Comment: C: cn.mops: copy number for low-coverage bam files?
12.7 years ago Paul Shannon ▴ 750
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0
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1.2k
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Answer: A: Doubt RCytoscape
12.7 years ago Paul Shannon ▴ 750
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0
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1.2k
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Error when try VariantAnnotation filterVcf vignette example
VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation
12.7 years ago Paul Shannon ▴ 750
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2.4k
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Comment: C: Visualization of metabolic network in lpSolve format
12.8 years ago Paul Shannon ▴ 750
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1
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1.4k
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5000 nodes RCytoscape
Network graph Network graph
12.8 years ago Paul Shannon ▴ 750
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1.4k
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Answer: A: 5000 nodes RCytoscape
12.8 years ago Paul Shannon ▴ 750
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0
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1.9k
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Comment: C: Quick questions about RCytoscape
12.8 years ago Paul Shannon ▴ 750
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1
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1.9k
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Answer: A: Quick questions about RCytoscape
12.8 years ago Paul Shannon ▴ 750
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1
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1.6k
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ChIPpeakAnno "examplePattern.fa" file
rGADEM MotifDb rGADEM MotifDb
updated 12.8 years ago by ▴ 80 • written 12.8 years ago by ▴ 750
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1
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2.4k
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Comment: C: Visualization of metabolic network in lpSolve format
12.8 years ago Paul Shannon ▴ 750
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1
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2.4k
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Answer: A: Visualization of metabolic network in lpSolve format
12.8 years ago Paul Shannon ▴ 750
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2
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1.4k
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Answer: A: bug in graph::edgeData()
12.9 years ago Paul Shannon ▴ 750
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0
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2.3k
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Answer: A: KEGGgraph problem
12.9 years ago Paul Shannon ▴ 750
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1
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3.6k
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Comment: C: about ComBat plot for non parametric
12.9 years ago Paul Shannon ▴ 750
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1
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3.6k
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Comment: C: about ComBat plot for non parametric
12.9 years ago Paul Shannon ▴ 750
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0
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1.8k
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Comment: C: geneid to gene name conversion
13.0 years ago Paul Shannon ▴ 750
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1
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1.8k
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Answer: A: geneid to gene name conversion
13.0 years ago Paul Shannon ▴ 750
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0
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1.2k
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Answer: A: DNA motif sequence prediction - finding a method to compare with
13.0 years ago Paul Shannon ▴ 750
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1
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3.0k
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Answer: A: Pasilla data for "Counting with summarizeOverlaps/GenomicRanges"
13.0 years ago Paul Shannon ▴ 750
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0
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918
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Answer: A: question about KEGGSOAP package
13.0 years ago Paul Shannon ▴ 750
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0
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2.2k
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RCytoscape on Windows
Network charm RCytoscape Network charm RCytoscape
13.1 years ago Paul Shannon ▴ 750
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1
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1.7k
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Answer: A: VariantAnnotation ALT Field
13.1 years ago Paul Shannon ▴ 750
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0
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1.5k
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Answer: A: RCytoscape on Windows
13.1 years ago Paul Shannon ▴ 750
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2
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1.5k
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RCytoscape on Windows
RCytoscape RCytoscape
13.1 years ago Paul Shannon ▴ 750
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1
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2.1k
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promoter prediction
Transcription MotIV MotifDb Transcription MotIV MotifDb
updated 13.1 years ago by ▴ 380 • written 13.1 years ago by ▴ 750
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0
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2.4k
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Comment: C: KEGGgraph
13.2 years ago Paul Shannon ▴ 750
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0
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2.4k
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Answer: A: KEGGgraph
13.2 years ago Paul Shannon ▴ 750
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1
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5.9k
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Comment: C: Extend GRanges start/end
13.2 years ago Paul Shannon ▴ 750
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0
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3.3k
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Comment: C: A basic question about retrieve the absolute genome position from the output of
13.2 years ago Paul Shannon ▴ 750
1
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1
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5.9k
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Answer: A: Extend GRanges start/end
13.2 years ago Paul Shannon ▴ 750
0
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1
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3.3k
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Comment: C: A basic question about retrieve the absolute genome position from the output of
13.2 years ago Paul Shannon ▴ 750
0
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0
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1.8k
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Answer: A: enrichment + topGO
13.3 years ago Paul Shannon ▴ 750
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0
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1.6k
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Answer: A: which R package can be used to do all the GO analysis
13.3 years ago Paul Shannon ▴ 750
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0
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1.6k
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Answer: A: which R package can be used to do all the GO analysis
13.3 years ago Paul Shannon ▴ 750
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0
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1.4k
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Comment: C: Mentored Projects at Bioconductor
13.3 years ago Paul Shannon ▴ 750
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0
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1.4k
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Answer: A: using RUnit inspect() feature in package testing
13.4 years ago Paul Shannon ▴ 750
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