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9
votes
8
replies
8.6k
views
removeBatchEffect options: design and covariates
limma removebatcheffect
updated 6.7 years ago by 50k • written 9.8 years ago by ▴ 550
0
votes
5
replies
4.7k
views
DESeq2 DESeqDataSetFromMatrix problem
deseq2
9.4 years ago Rao,Xiayu ▴ 550
6
votes
7
replies
2.2k
views
what causes the difference in the topTable results by the two analyses using limma?
limma topTable
updated 9.6 years ago by ★ 28k • written 9.6 years ago by ▴ 550
0
votes
1
reply
2.9k
views
removeBatchEffect and random effect
limma
updated 9.7 years ago by 50k • written 9.7 years ago by ▴ 550
0
votes
6
replies
1.5k
views
Any problem with the design matrix or the contrasts? Thanks
updated 9.8 years ago by ★ 7.9k • written 9.8 years ago by ▴ 550
0
votes
0
replies
1.0k
views
multi-level design - a simplified question - corrected table
9.8 years ago Rao,Xiayu ▴ 550
0
votes
0
replies
1.1k
views
multi-level design - a simplified question
9.8 years ago Rao,Xiayu ▴ 550
0
votes
0
replies
1.1k
views
multi-level experiments - limma
Normalization limma Normalization limma
9.8 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
789
views
remove duplicated rows generated by read.ilmn()
limma limma
9.8 years ago Rao,Xiayu ▴ 550
0
votes
0
replies
965
views
multi-level design and contrasts problem - limma
limma limma
9.8 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
2.0k
views
heatmap.2 x-axis label order problem
updated 9.8 years ago by 65k • written 9.8 years ago by ▴ 550
0
votes
2
replies
1.6k
views
Affymetrix mouse 430_2 array - annotation problem
Annotation mouse4302 annotate Annotation mouse4302 annotate
updated 9.8 years ago by 65k • written 9.8 years ago by ▴ 550
0
votes
1
reply
1.1k
views
time course experiment design
limma limma
updated 9.8 years ago by 65k • written 9.8 years ago by ▴ 550
0
votes
4
replies
1.8k
views
Affymetrix mouse 430_2 array - gene expression and annotation
Annotation mouse4302 probe oligo Annotation mouse4302 probe oligo
updated 9.8 years ago by 65k • written 9.8 years ago by ▴ 550
0
votes
2
replies
1.4k
views
dexseq fitDispersionFunction(ecs) error
GO DEXSeq GO DEXSeq
updated 10.0 years ago by ★ 1.9k • written 10.0 years ago by ▴ 550
0
votes
3
replies
2.1k
views
dexseq read.HTSeqCounts error
DEXSeq DEXSeq
updated 10.1 years ago by ★ 1.9k • written 10.1 years ago by ▴ 550
0
votes
1
reply
724
views
R 3.1.0 and dexseq 1.8.0
GO DEXSeq GO DEXSeq
updated 10.1 years ago by 25k • written 10.1 years ago by ▴ 550
0
votes
5
replies
1.7k
views
DEXSeq output - count file
DEXSeq DEXSeq
10.2 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
1.7k
views
aggregate genes in DEXSeq
DEXSeq DEXSeq
updated 10.2 years ago by ★ 1.9k • written 10.2 years ago by ▴ 550
0
votes
0
replies
933
views
variation between chips - neqc()
Microarray Normalization probe limma lumi Microarray Normalization probe limma lumi
10.6 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
2.2k
views
preprocessCore load problem in R
updated 10.7 years ago by ★ 8.2k • written 10.7 years ago by ▴ 550
0
votes
0
replies
1.1k
views
symbol and filtering -affy hugene ST 1.0 -oligo limma
Microarray limma Microarray limma
10.8 years ago Rao,Xiayu ▴ 550
0
votes
2
replies
1.7k
views
getSYMBOL( ) error
updated 10.8 years ago by 65k • written 10.8 years ago by ▴ 550
0
votes
0
replies
1.0k
views
illumina microarray and affymetrix exon array data
Microarray affy Microarray affy
10.8 years ago Rao,Xiayu ▴ 550
0
votes
4
replies
1.5k
views
read.ilmn() and variation between chips
Microarray Normalization probe limma Microarray Normalization probe limma
updated 10.8 years ago by 50k • written 10.9 years ago by ▴ 550
0
votes
3
replies
895
views
read.ilmn() and variation between chips
Microarray Normalization limma Microarray Normalization limma
updated 10.9 years ago by 50k • written 10.9 years ago by ▴ 550
0
votes
4
replies
1.2k
views
test for differential expresssion
updated 10.9 years ago by 50k • written 10.9 years ago by ▴ 550
0
votes
0
replies
930
views
illumina microarray analysis questions (limma and heatmap)
Microarray Normalization probe limma Microarray Normalization probe limma
10.9 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
1.9k
views
heatmap-exprs error
limma limma
updated 10.9 years ago by ★ 13k • written 10.9 years ago by ▴ 550
0
votes
1
reply
3.1k
views
heatmap from limma output
limma limma
updated 10.9 years ago by 65k • written 10.9 years ago by ▴ 550
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