Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
removebatcheffect
•
reset
4
votes
7
replies
3.7k
views
Check removeBatchEffect effectiveness
RNAseq
limma
removeBatchEffect
10 months ago • updated 5 months ago
massimo
▴ 10
2
votes
2
replies
882
views
Batch adjustment for cohort based RNA seq data
RNASeqPower
removeBatchEffect
cpm
Batcheffect
17 months ago
sukeshinik5
▴ 20
17
votes
9
replies
8.7k
views
How to use removeBatchEffect for removing effect of multiple confounding variables
limma
removebatcheffect
deseq2
updated 17 months ago by
James W. MacDonald
68k • written 9.8 years ago by
ompandey
▴ 10
4
votes
4
replies
1.9k
views
Using both voom and removeBatchEffect, will they double adjust the data or is it the right way to perform this
limma
adjustment
voom
removeBatchEffect
covariates
20 months ago
sukeshinik5
▴ 20
0
votes
2
replies
2.0k
views
Remove batch effect between microarray data
Microarray
DifferentialExpression
limma
MicroarrayData
removebatcheffect
3.2 years ago
dqt
• 0
0
votes
5
replies
6.6k
views
How to remove batch effect from RNA-seq without count data?
RUVSeq
FPKM
removeBatchEffect
RNA-seq
sva
updated 4.2 years ago by
ATpoint
★ 5.0k • written 5.0 years ago by
Xiaojie Cheng
• 0
0
votes
1
reply
1.4k
views
Should the design matrix for removeBatchEffect include an intercept?
removeBatchEffect
limma
updated 6.1 years ago by
Gordon Smyth
53k • written 6.1 years ago by
Sam
▴ 10
5
votes
7
replies
4.0k
views
logCPM to CPM conversion after removeBatchEffect()
edger
removeBatchEffect
cpm
logCPM
limma
6.8 years ago
altintas.ali
• 0
1
vote
6
replies
2.5k
views
edgeR removing batch effect before using expression data for clustering
edger
r
batcheffect
clustering
removeBatchEffect
updated 6.8 years ago by
James W. MacDonald
68k • written 6.8 years ago by
Biologist
▴ 120
2
votes
5
replies
5.8k
views
Batch Effect Correction
batch effect
removebatcheffect
edgeR
rld
DEseq2
7.6 years ago
Antonio Ahn
▴ 10
1
vote
1
reply
2.2k
views
Batch effect removal before SC3?
SC3
batch effect
removebatcheffect
updated 8.2 years ago by
Vladimir Kiselev
▴ 150 • written 8.3 years ago by
muad.abdelhay
▴ 10
11
votes
8
replies
13k
views
Limma and batch effect
limma
differential gene expression
clustering
removebatcheffect
updated 8.5 years ago by
Gordon Smyth
53k • written 8.5 years ago by
lirongrossmann
▴ 80
9
votes
8
replies
12k
views
removeBatchEffect options: design and covariates
limma
removebatcheffect
updated 8.5 years ago by
Gordon Smyth
53k • written 11.6 years ago by
Rao,Xiayu
▴ 550
0
votes
1
reply
3.2k
views
Error in solve.default(t(mod) %*% mod) : Lapack routine dgesv: system is exactly singular: U[4,4] = 0
sva
R
removebatcheffect
8.8 years ago
aina.jene
▴ 10
2
votes
2
replies
2.7k
views
SVA package - ERROR: nvobj = sva(edata, mod, mod0, n.sv=n.sv)
sva
removebatcheffect
R
updated 8.8 years ago by
sina.nassiri
▴ 130 • written 8.8 years ago by
aina.jene
▴ 10
1
vote
3
replies
1.9k
views
Re-use limma beta coefficients
limma
removebatcheffect
9.3 years ago
Keifa
▴ 10
3
votes
6
replies
3.7k
views
is it necessary to check batch effect in this case? and how to?
svaseq
combat sva
RANseq
batcheffect
removebatcheffect
updated 9.4 years ago by
Jakub
▴ 50 • written 9.4 years ago by
amoltej
▴ 10
0
votes
3
replies
2.0k
views
How to remove nested batch effects with removeBatchEffect?
edgeR
removeBatchEffect
nested design
updated 9.4 years ago by
Aaron Lun
★ 29k • written 9.4 years ago by
Jenny Drnevich
★ 2.0k
4
votes
5
replies
3.6k
views
Removing unwanted variation (RUV) for paired analysis ?
ruvseq
edger
ruvg
removebatcheffect
updated 10.1 years ago by
Aaron Lun
★ 29k • written 10.1 years ago by
g.atla
▴ 10
9
votes
10
replies
15k
views
Is the following a correct usage of Limma's removeBatchEffect() for clustered heat map generation?
limma
removeBatchEffect
heatmap
clustering
updated 10.2 years ago by
Bernd Klaus
▴ 610 • written 10.2 years ago by
Ekarl2
▴ 80
20 results • Page
1 of 1
Recent ...
Replies
Comment: Inclusion of non-coding portions of transcripts (UTR-regions and introns) within
by
Pat
• 0
Ill be honest, I didnt trust any of these services for a long time. Im a political science major and the pressure around writing is intense…
Comment: Question on processing compound protein groups in limpa
by
brianpeterson1210
• 0
Thank you[,][1] Appreciated! [1]: http://paint3d.org
Comment: Subsetting DDS object for individual conditions over time
by
A
▴ 60
Hi @atpoint Thank you for the quick reply! and this makes sense! I will confirm with a corr to see how the SFs differ but also how DE dif…
Answer: Subsetting DDS object for individual conditions over time
by
ATpoint
★ 5.0k
It would surprise my quite a bit if the size factors would differ notably between subset or not. I would always try to keep the size factor…
Comment: GSEA error
by
Adithi
• 0
Thank you so much. That makes perfect sense to me. I will work on this.
Votes
Comment: Question about using LRT test for time course experiments with DESeq2
A: DESeq2 LRT test for multi-factor designs
Answer: RNA Seq using Lrt
Answer: DESeq2 LRT Reduced Formula
Answer: DESeq2: LRT or WALD guidance
Awards
• All
Teacher
to
ATpoint
★ 5.0k
Teacher
to
Michael Love
43k
Popular Question
to
A
▴ 60
Popular Question
to
Aichatou
• 0
Popular Question
to
boczniak767
▴ 740
Locations
• All
Spain,
2 minutes ago
United States,
17 minutes ago
The city by the bay,
21 minutes ago
Wageningen University, Wageningen, the Netherlands,
38 minutes ago
Barcelona, Spain,
52 minutes ago
Traffic: 1781 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6