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scan() error when using biomaRt::getBM()
biomart scan error
9.3 years ago enricoferrero ▴ 660
2
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1
reply
1.2k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich log
updated 9.3 years ago by ▴ 50 • written 9.3 years ago by ▴ 660
0
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1
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2.7k
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Comment: C: [DiffBind] Memory issues with dba.count()
9.3 years ago enricoferrero ▴ 660
1
vote
3
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2.7k
views
[DiffBind] Memory issues with dba.count()
diffbind bigmemory matrix dba.count
updated 9.3 years ago by ★ 5.2k • written 9.3 years ago by ▴ 660
0
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1
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7.0k
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Comment: C: [DESeq2] Cook's distance flagging for continuous variables
9.5 years ago enricoferrero ▴ 660
0
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1
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7.0k
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Comment: C: [DESeq2] Cook's distance flagging for continuous variables
9.5 years ago enricoferrero ▴ 660
0
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1
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7.0k
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Comment: C: [DESeq2] Cook's distance flagging for continuous variables
9.5 years ago enricoferrero ▴ 660
0
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1
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7.0k
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Comment: C: [DESeq2] Cook's distance flagging for continuous variables
9.5 years ago enricoferrero ▴ 660
0
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1
reply
7.0k
views
Comment: C: [DESeq2] Cook's distance flagging for continuous variables
9.6 years ago enricoferrero ▴ 660
8
votes
11
replies
7.0k
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[DESeq2] Cook's distance flagging for continuous variables
deseq2 rnaseq
updated 9.6 years ago by 43k • written 9.6 years ago by ▴ 660
17
votes
4
replies
17k
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How to properly sort GRanges?
granges genomicranges sort seqnames order
updated 9.7 years ago by ▴ 30 • written 10.1 years ago by ▴ 660
0
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1
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2.7k
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Comment: C: DESeq2 not shrinking fold changes?
10.1 years ago enricoferrero ▴ 660
4
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3
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2.7k
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DESeq2 not shrinking fold changes?
deseq2
10.1 years ago enricoferrero ▴ 660
0
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1
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2.0k
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Comment: C: DiffBind time course
10.3 years ago enricoferrero ▴ 660
0
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4
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2.0k
views
DiffBind time course
DiffBind
updated 10.3 years ago by ★ 5.2k • written 10.3 years ago by ▴ 660
2
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3
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5.5k
views
Linkage disequilibrium with 1000 Genomes/HapMap
HapMap genomes HapMap genomes
10.4 years ago enricoferrero ▴ 660
1
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1
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5.5k
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Answer: A: Linkage disequilibrium with 1000 Genomes/HapMap
10.4 years ago enricoferrero ▴ 660
0
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0
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887
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PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich PWMEnrich
10.5 years ago enricoferrero ▴ 660
0
votes
2
replies
9.5k
views
biomaRt proxy issues
biomaRt biomaRt
updated 10.5 years ago by ▴ 30 • written 10.5 years ago by ▴ 660
0
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0
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2.0k
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Comment: C: Running the GSEA algorithm
10.7 years ago enricoferrero ▴ 660
0
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5
replies
3.7k
views
Running the GSEA algorithm
Infrastructure PGSEA GSEABase SeqGSEA Infrastructure PGSEA GSEABase SeqGSEA
updated 10.7 years ago by ★ 1.3k • written 10.7 years ago by ▴ 660
0
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0
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2.1k
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Comment: C: Can't install Rgraphviz
10.8 years ago enricoferrero ▴ 660
0
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1
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2.1k
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Comment: C: Can't install Rgraphviz
10.8 years ago enricoferrero ▴ 660
0
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1
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2.1k
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Comment: C: Can't install Rgraphviz
10.8 years ago enricoferrero ▴ 660
0
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1
reply
2.1k
views
Comment: C: Can't install Rgraphviz
10.8 years ago enricoferrero ▴ 660
0
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1
reply
2.1k
views
Comment: C: Can't install Rgraphviz
10.8 years ago enricoferrero ▴ 660
0
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1
reply
2.1k
views
Comment: C: Can't install Rgraphviz
10.8 years ago enricoferrero ▴ 660
0
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12
replies
2.1k
views
Can't install Rgraphviz
Rgraphviz Rgraphviz
updated 10.8 years ago by ★ 6.5k • written 10.8 years ago by ▴ 660
0
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0
replies
5.1k
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Comment: C: Simple pathway enrichment analysis for gene lists
11.3 years ago enricoferrero ▴ 660
0
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1
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5.1k
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Comment: C: Simple pathway enrichment analysis for gene lists
11.3 years ago enricoferrero ▴ 660
0
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7
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5.1k
views
Simple pathway enrichment analysis for gene lists
Microarray Category gage KEGGREST ROntoTools Microarray Category gage KEGGREST ROntoTools
updated 11.3 years ago by ▴ 470 • written 11.3 years ago by ▴ 660
0
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0
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14k
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Comment: C: [GenomicRanges] subsetByOverlaps to keep info from both GRanges objects?
11.3 years ago enricoferrero ▴ 660
0
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1
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14k
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Comment: C: [GenomicRanges] subsetByOverlaps to keep info from both GRanges objects?
11.3 years ago enricoferrero ▴ 660
3
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4
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14k
views
[GenomicRanges] subsetByOverlaps to keep info from both GRanges objects?
updated 11.3 years ago by ★ 6.8k • written 11.3 years ago by ▴ 660
1
vote
4
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4.5k
views
[topGO] More flexible way to select 'interesting' genes
GO probe topGO GO probe topGO
updated 11.4 years ago by ▴ 400 • written 11.4 years ago by ▴ 660
0
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0
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4.5k
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Answer: A: [topGO] More flexible way to select 'interesting' genes
11.4 years ago enricoferrero ▴ 660
0
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0
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2.3k
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Comment: C: About the state of KEGG-related packages
11.4 years ago enricoferrero ▴ 660
0
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1
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2.3k
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Comment: C: About the state of KEGG-related packages
11.4 years ago enricoferrero ▴ 660
0
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1
reply
2.2k
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Comment: C: Quickest way to convert IDs in a data frame?
11.4 years ago enricoferrero ▴ 660
1
vote
5
replies
2.3k
views
About the state of KEGG-related packages
KEGGSOAP KEGGgraph keggorthology clusterProfiler KEGGprofile PathNet KEGGSOAP KEGGgraph
updated 11.4 years ago by ★ 1.6k • written 11.4 years ago by ▴ 660
0
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1
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2.2k
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Comment: C: Quickest way to convert IDs in a data frame?
11.4 years ago enricoferrero ▴ 660
0
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1
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2.2k
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Comment: C: Quickest way to convert IDs in a data frame?
11.4 years ago enricoferrero ▴ 660
0
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2
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2.2k
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Comment: C: Quickest way to convert IDs in a data frame?
11.4 years ago enricoferrero ▴ 660
0
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1
reply
2.2k
views
Comment: C: Quickest way to convert IDs in a data frame?
11.4 years ago enricoferrero ▴ 660
0
votes
19
replies
2.2k
views
Quickest way to convert IDs in a data frame?
updated 11.4 years ago by ★ 1.7k • written 11.4 years ago by ▴ 660
0
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1
reply
1.9k
views
Comment: C: IRanges is broken in Cygwin (mingw/math.h)
11.4 years ago enricoferrero ▴ 660
0
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2
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1.9k
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Comment: C: IRanges is broken in Cygwin (mingw/math.h)
11.4 years ago enricoferrero ▴ 660
0
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1
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1.9k
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Comment: C: IRanges is broken in Cygwin (mingw/math.h)
11.4 years ago enricoferrero ▴ 660
0
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2
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1.9k
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Comment: C: IRanges is broken in Cygwin (mingw/math.h)
11.4 years ago enricoferrero ▴ 660
0
votes
16
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1.9k
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IRanges is broken in Cygwin (mingw/math.h)
IRanges IRanges
updated 11.4 years ago by ★ 11k • written 11.4 years ago by ▴ 660
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