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pwmenrich
•
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0
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684
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How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
5.5 years ago
intregen
• 0
0
votes
0
replies
791
views
makeBackground error message "Sequence only contain N's"
pwmenrich
6.2 years ago
gdeniz
• 0
0
votes
1
reply
870
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
6.4 years ago
amanda.joy.price
▴ 10
0
votes
0
replies
729
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
6.5 years ago
prp291
• 0
0
votes
1
reply
1.9k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 7.9 years ago by
Ou, Jianhong
★ 1.3k • written 7.9 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.0k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
8.0 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
1.9k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.3 years ago by
Robert Stojnic
▴ 50 • written 8.3 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.3k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.4 years ago
enricoferrero
▴ 660
0
votes
3
replies
1.5k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
8.7 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.3k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 8.7 years ago by
Robert Stojnic
▴ 50 • written 8.7 years ago by
elliott77
• 0
2
votes
1
reply
1.1k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 8.9 years ago by
Robert Stojnic
▴ 50 • written 8.9 years ago by
enricoferrero
▴ 660
1
vote
3
replies
1.5k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
8.9 years ago
oliwindram
▴ 10
0
votes
5
replies
2.6k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 9.9 years ago by
Robert Stojnic
▴ 80 • written 9.9 years ago by
deepti anand
▴ 50
0
votes
0
replies
834
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
10.1 years ago
enricoferrero
▴ 660
0
votes
8
replies
1.7k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 10.6 years ago by
Robert Stojnic
▴ 80 • written 10.6 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.3k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 10.9 years ago by
Robert Stojnic
▴ 50 • written 10.9 years ago by
Guest User
★ 13k
16 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Leonardo Collado Torres
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Gordon Smyth
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