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4
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4
replies
6.0k
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Clarifications on p-values in enrichResult objects
clusterProfiler reactomepa dose
updated 3.0 years ago by • 0 • written 9.2 years ago by ▴ 680
0
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0
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2.5k
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Comment: Comment: Ensuring reproducibility in BiocParallel SingleCellExperiment workflows
4.0 years ago enricoferrero ▴ 680
3
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3
replies
2.5k
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Ensuring reproducibility in BiocParallel SingleCellExperiment workflows
scater SingleCellExperiment BiocParallel scuttle scran
4.0 years ago enricoferrero ▴ 680
0
votes
0
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1.8k
views
Comment: Comment: scater::plotHeatmap with swap_rownames gives error
4.0 years ago enricoferrero ▴ 680
2
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3
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1.8k
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scater::plotHeatmap with swap_rownames gives error
scater
4.0 years ago enricoferrero ▴ 680
0
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0
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1.8k
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Comment: Comment: scater::plotHeatmap with swap_rownames gives error
4.0 years ago enricoferrero ▴ 680
0
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1
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4.6k
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Comment: Comment: Using limma for the analysis of qPCR data
4.8 years ago enricoferrero ▴ 680
3
votes
4
replies
4.6k
views
Using limma for the analysis of qPCR data
NormqPCR EasyqpcR qPCR HTqPCR limma
updated 4.0 years ago by ▴ 380 • written 4.8 years ago by ▴ 680
0
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0
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3.7k
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Comment: Comment: scuttle::aggregateAcrossCells() crashes R on large SingleCellExperiment
4.8 years ago enricoferrero ▴ 680
2
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1
reply
3.7k
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Comment: Comment: scuttle::aggregateAcrossCells() crashes R on large SingleCellExperiment
4.8 years ago enricoferrero ▴ 680
4
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5
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3.7k
views
scuttle::aggregateAcrossCells() crashes R on large SingleCellExperiment
scran SingleCellExperiment scuttle scater
updated 4.8 years ago by ★ 29k • written 4.8 years ago by ▴ 680
0
votes
1
reply
8.5k
views
Comment: C: scRNA-seq pseudo-bulk differential expression analysis with pseudobulkDGE()
5.2 years ago enricoferrero ▴ 680
5
votes
4
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8.5k
views
scRNA-seq pseudo-bulk differential expression analysis with pseudobulkDGE()
scran scater scuttle
updated 5.2 years ago by ★ 29k • written 5.2 years ago by ▴ 680
0
votes
1
reply
9.4k
views
Comment: C: Cannot connect to ExperimentHub server
5.2 years ago enricoferrero ▴ 680
0
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1
reply
9.4k
views
Comment: C: Cannot connect to ExperimentHub server
5.2 years ago enricoferrero ▴ 680
0
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1
reply
9.4k
views
Comment: C: Cannot connect to ExperimentHub server
5.2 years ago enricoferrero ▴ 680
0
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0
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9.4k
views
Comment: C: Cannot connect to ExperimentHub server
5.2 years ago enricoferrero ▴ 680
0
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1
reply
9.4k
views
Comment: C: Cannot connect to ExperimentHub server
5.2 years ago enricoferrero ▴ 680
8
votes
16
replies
9.4k
views
Cannot connect to ExperimentHub server
ExperimentHub AnnotationHub SingleR
updated 5.2 years ago by 4.2k • written 5.2 years ago by ▴ 680
0
votes
0
replies
2.9k
views
Comment: C: Using RUVSeq RUVs() to perform batch correction using technical replicates
6.7 years ago enricoferrero ▴ 680
1
vote
3
replies
2.9k
views
Using RUVSeq RUVs() to perform batch correction using technical replicates
RUVSeq ruvseq RUVs DESEq2 deseq2
updated 6.7 years ago by 53k • written 6.7 years ago by ▴ 680
0
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0
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3.1k
views
Comment: C: RNA-seq batch correction using technical replicates profiled across batches
6.7 years ago enricoferrero ▴ 680
4
votes
4
replies
3.1k
views
RNA-seq batch correction using technical replicates profiled across batches
deseq2 ruvseq sva edger limma
updated 6.7 years ago by 53k • written 6.7 years ago by ▴ 680
0
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1
reply
3.1k
views
Comment: C: RNA-seq batch correction using technical replicates profiled across batches
6.7 years ago enricoferrero ▴ 680
0
votes
0
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2.1k
views
Comment: C: DESeq2 w. pathway/network info as a prior knowledge
6.7 years ago enricoferrero ▴ 680
0
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1
reply
6.3k
views
Comment: C: [limma] Define contrasts for model with covariates
7.3 years ago enricoferrero ▴ 680
9
votes
3
replies
6.3k
views
[limma] Define contrasts for model with covariates
limma model.matrix makecontrasts
updated 7.3 years ago by 53k • written 7.3 years ago by ▴ 680
0
votes
0
replies
4.0k
views
Comment: C: Invitation to submit articles to the Bioconductor gateway on F1000Research
7.5 years ago enricoferrero ▴ 680
0
votes
1
reply
2.3k
views
Comment: C: Gviz IdeogramTrack fails with Error: failed to load HTTP resource
7.7 years ago enricoferrero ▴ 680
0
votes
4
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2.3k
views
Gviz IdeogramTrack fails with Error: failed to load HTTP resource
gviz gviz-package rtracklayer http
7.7 years ago enricoferrero ▴ 680
0
votes
0
replies
1.9k
views
Comment: C: [VariantAnnotation] Preserve query metadata with locateVariants()
7.9 years ago enricoferrero ▴ 680
2
votes
2
replies
1.9k
views
[VariantAnnotation] Preserve query metadata with locateVariants()
variantannotation locatevariants metadata mcols
updated 7.9 years ago by ★ 6.8k • written 7.9 years ago by ▴ 680
5
votes
4
replies
2.7k
views
[gwascat] Updated GWAS catalog from file
gwascat
7.9 years ago enricoferrero ▴ 680
2
votes
0
replies
2.7k
views
Answer: A: [gwascat] Updated GWAS catalog from file
7.9 years ago enricoferrero ▴ 680
0
votes
1
reply
2.7k
views
Comment: C: [gwascat] Updated GWAS catalog from file
7.9 years ago enricoferrero ▴ 680
4
votes
9
replies
2.8k
views
keys() fails on EnsDb.Hsapiens.v75 on Bioc 3.5
ensdb.hsapiens.v75 ensembldb keys
updated 8.5 years ago by ★ 2.1k • written 8.5 years ago by ▴ 680
1
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0
replies
2.8k
views
Comment: C: keys() fails on EnsDb.Hsapiens.v75 on Bioc 3.5
8.5 years ago enricoferrero ▴ 680
0
votes
1
reply
2.8k
views
Comment: C: keys() fails on EnsDb.Hsapiens.v75 on Bioc 3.5
8.5 years ago enricoferrero ▴ 680
0
votes
1
reply
2.8k
views
Comment: C: keys() fails on EnsDb.Hsapiens.v75 on Bioc 3.5
8.5 years ago enricoferrero ▴ 680
0
votes
1
reply
2.8k
views
Comment: C: keys() fails on EnsDb.Hsapiens.v75 on Bioc 3.5
8.5 years ago enricoferrero ▴ 680
0
votes
0
replies
1.5k
views
Comment: C: What is the confidence interval in ChIPseeker::plotAvgProf?
8.5 years ago enricoferrero ▴ 680
0
votes
2
replies
1.5k
views
What is the confidence interval in ChIPseeker::plotAvgProf?
chipseeker
8.5 years ago enricoferrero ▴ 680
2
votes
1
reply
4.4k
views
Assign custom dendrogram to ComplexHeatmap Heatmap object
complexheatmap heatmap.2 dendrogram dendextend heatmap
updated 9.0 years ago by ▴ 200 • written 9.0 years ago by ▴ 680
0
votes
0
replies
1.5k
views
Enrichment of GWAS SNPs in regulatory regions
genomicranges enrichment fisher
9.1 years ago enricoferrero ▴ 680
0
votes
1
reply
6.0k
views
Comment: C: Clarifications on p-values in enrichResult objects
9.2 years ago enricoferrero ▴ 680
1
vote
1
reply
2.7k
views
Comment: C: ChIPseeker::vennplot() fails with Error in ss[[1]] : subscript out of bounds
9.3 years ago enricoferrero ▴ 680
3
votes
4
replies
2.7k
views
ChIPseeker::vennplot() fails with Error in ss[[1]] : subscript out of bounds
chipseeker venn vennplot genomicranges granges
9.3 years ago enricoferrero ▴ 680
1
vote
0
replies
2.7k
views
Answer: A: ChIPseeker::vennplot() fails with Error in ss[[1]] : subscript out of bounds
9.3 years ago enricoferrero ▴ 680
1
vote
1
reply
1.9k
views
Custom scoring for subnetworks in BioNet
bionet network
updated 9.4 years ago by ▴ 120 • written 9.4 years ago by ▴ 680
0
votes
0
replies
1.8k
views
Comment: C: Additional high-scoring subnetworks in BioNet
9.4 years ago enricoferrero ▴ 680
150 results • Page 1 of 3
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