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Comment: Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome
11 weeks ago bernatgel ▴ 150
0
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1
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973
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Error retrieving cytobands from UCSC
biovizBase biovi
updated 17 months ago by 68k • written 17 months ago by ▴ 150
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1.9k
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Answer: Answer: karyoploteR genome coverage plotting using BSgenome.TAIR10
2.4 years ago bernatgel ▴ 150
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2
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1.5k
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Support for CSI indexes in Rsamtools
Rsamtools
4.2 years ago bernatgel ▴ 150
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1.5k
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Comment: Comment: Support for CSI indexes in Rsamtools
4.2 years ago bernatgel ▴ 150
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1.2k
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Answer: A: need help with overlap overrepresentation using permutation tests for composite
4.3 years ago bernatgel ▴ 150
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3.4k
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Answer: A: How to create manhattan plot with DESeq2
4.3 years ago bernatgel ▴ 150
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1.3k
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Comment: C: PTEN missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
5.0 years ago bernatgel ▴ 150
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2
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1.3k
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Comment: C: PTEN missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
5.1 years ago bernatgel ▴ 150
6
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5
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1.3k
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PTEN missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene
updated 5.1 years ago by 4.1k • written 5.1 years ago by ▴ 150
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858
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Answer: A: behaviour of regioneR permTest function
5.4 years ago bernatgel ▴ 150
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1
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3.6k
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Comment: C: How to add a color legend to plotKaryotype and kpPlotRegions ?
5.5 years ago bernatgel ▴ 150
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0
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3.6k
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Comment: C: How to add a color legend to plotKaryotype and kpPlotRegions ?
5.5 years ago bernatgel ▴ 150
3
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1
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3.6k
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Answer: A: How to add a color legend to plotKaryotype and kpPlotRegions ?
5.5 years ago bernatgel ▴ 150
0
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0
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1.1k
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Comment: C: Replacement error in PermTest
5.6 years ago bernatgel ▴ 150
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1
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1.1k
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Comment: C: Replacement error in PermTest
5.6 years ago bernatgel ▴ 150
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0
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1.1k
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Answer: A: Visualisation of ChIP-seq data in r - function errors in Gviz and biomaRt
5.6 years ago bernatgel ▴ 150
1
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0
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833
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Answer: A: regioneR meanInRegions to evaluate mutation accumulation
5.8 years ago bernatgel ▴ 150
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0
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807
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Answer: A: Is localZScore function of regioneR mask-aware?
5.8 years ago bernatgel ▴ 150
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0
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1.2k
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Answer: A: Bioconductor - Karyoploter | Visualization | Multiple Chromosome display issue
5.8 years ago bernatgel ▴ 150
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0
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645
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Answer: A: regioneR ignore the strand information when using the extendRegions() function
6.1 years ago bernatgel ▴ 150
1
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1
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2.3k
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Comment: C: permutation test on one set of data to get p-value of highest peaks. permTest?
6.9 years ago bernatgel ▴ 150
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0
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2.3k
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Comment: C: permutation test on one set of data to get p-value of highest peaks. permTest?
6.9 years ago bernatgel ▴ 150
1
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1
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2.3k
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Answer: A: permutation test on one set of data to get p-value of highest peaks. permTest?
6.9 years ago bernatgel ▴ 150
1
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0
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1.4k
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Answer: A: RegioneR perm test result Plot- how is y axis calculated
7.3 years ago bernatgel ▴ 150
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0
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2.2k
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Answer: A: How to name the custom genome in karyoploteR ?
7.3 years ago bernatgel ▴ 150
0
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0
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1.8k
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Answer: A: Circos Tile colors
7.8 years ago bernatgel ▴ 150
1
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1
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3.6k
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Comment: C: Error running the function permTest
7.8 years ago bernatgel ▴ 150
1
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1
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3.6k
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Answer: A: Error running the function permTest
7.8 years ago bernatgel ▴ 150
0
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0
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2.9k
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Answer: A: how to plot human genome chromosome Ideogram with each length by Gviz
8.0 years ago bernatgel ▴ 150
2
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0
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1.4k
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Answer: A: Conflicting results in 'overlapPermTest' function from regioneR package
8.1 years ago bernatgel ▴ 150
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0
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1.6k
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Comment: C: Sample code doesn't seem to be working on fresh install of regioneR
8.8 years ago bernatgel ▴ 150
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0
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1.1k
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Answer: A: width(GRanges) increases after randomizeRegions(..) in package RegioneR
9.0 years ago bernatgel ▴ 150
2
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0
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2.2k
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Answer: A: Retrieving Regions from hg38 of the same GC content and length with a list of el
9.2 years ago bernatgel ▴ 150
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