Bioconductor TxDb.Hsapiens.UCSC.hg38.knownGene

Showing : TxDb.Hsapiens.UCSC.hg38.knownGene • reset

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755

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

6 months ago davidhillis • 0

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376

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microRNA TxDb.Hsapiens.UCSC.hg38.knownGene

8 months ago Lluís Revilla Sancho ▴ 720

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2.8k

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install TxDb.Hsapiens.UCSC.hg38.knownGene

18 months ago Theresa ▴ 20

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1.0k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 21 months ago by Hervé Pagès 16k • written 21 months ago by BioEpi • 0

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1.2k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 2.6 years ago by James W. MacDonald 63k • written 2.6 years ago by lukijanczukpawel • 0

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734

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 3.6 years ago by kayla.interdonato 150 • written 3.6 years ago by jam526 • 0

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756

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TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.7 years ago by shepherl 3.5k • written 3.7 years ago by bernatgel ▴ 150

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630

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HLA TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.7 years ago by kayla.interdonato 150 • written 3.7 years ago by Kamil Slowikowski ▴ 30

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2.1k

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TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene

updated 4.0 years ago by James W. MacDonald 63k • written 4.0 years ago by Aditya ▴ 160

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1.6k

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TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

4.4 years ago Ruichao.Zeng ▴ 10

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2.3k

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txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db

updated 5.8 years ago by Simon Anders ★ 3.7k • written 5.8 years ago by Mark Dunning ★ 1.1k

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1.1k

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s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene

6.0 years ago Leonardo Collado Torres ★ 1.0k

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2.3k

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annotation txdb.hsapiens.ucsc.hg38.knowngene bug

7.0 years ago shilin.zhao ▴ 40

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3.2k

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txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation

7.4 years ago enricoferrero ▴ 660

14 results • Page 1 of 1

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Comment: DiffBind handling of replicates and consensus by Rory Stark ★ 5.0k

You may want to try different values for the `normalize` parameter: dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…

Comment: DiffBind: dba.plotProfile(profiles) by Rory Stark ★ 5.0k

Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…

Comment: DiffBind: dba.plotProfile(profiles) by Dorien ▴ 10

Not really an answer as I don't know really know why , but I also had the same issue and may have found a workaround ! If I set maxSites > …

Comment: Suggested package missing from Development version of Bioconductor by shepherl 3.5k

Is your package in review or already in Bioconductor? Its harder if it is in review because we can't tell that the package has or can build…

Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by andrew.b.kleist • 0

This worked perfectly! I was able to retrieve the sequences of interest using ```host="https://grch37.ensembl.org"``` within the useEnsembl…

Votes

Answer: DiffBind - how to prep the sample matrix when multiple bam files are used by MAC

Comment: DiffBind: dba.plotProfile(profiles)

Normalisation of data using DESeq2 with multi-groups

Answer: Normalisation of data using DESeq2 with multi-groups

Answer: Deseq2 calculated log2foldchange not consistent with RPM in IP-small RNA-seq

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