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6
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Once again a "Model matrix not full rank"
DESeq2 design coldata
updated 20 months ago by ★ 1.4k • written 20 months ago by ▴ 130
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1
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1.2k
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Comment: Comment: Once again a "Model matrix not full rank"
20 months ago arfranco ▴ 130
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1
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1.2k
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Comment: Comment: Once again a "Model matrix not full rank"
20 months ago arfranco ▴ 130
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0
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1.3k
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Comment: Comment: Confounding DE results with DESeq2
3.8 years ago arfranco ▴ 130
2
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2
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1.3k
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Confounding DE results with DESeq2
isoforms DESeq2
3.8 years ago arfranco ▴ 130
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1
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1.5k
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Comment: C: Installation path not writable
5.9 years ago arfranco ▴ 130
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0
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1.2k
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Answer: A: What will lead DESeq2 shows no DEGs if workflow adopted is okay?
6.8 years ago arfranco ▴ 130
1
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1
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815
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What do you do with the DESeq2 NA results ?. How do you manage them ?
DESeq2 NA values
updated 8.0 years ago by 43k • written 8.0 years ago by ▴ 130
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0
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1.7k
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Answer: A: Differential expression of RNA seq data at gene level (for Beginner)
8.0 years ago arfranco ▴ 130
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1
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4.5k
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Answer: A: Generate 3' UTR and 5' UTR ranges from a gff file
8.0 years ago arfranco ▴ 130
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0
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1.8k
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Comment: C: limma. After running a differential expression analysis... Can you get the indiv
8.1 years ago arfranco ▴ 130
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1
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1.8k
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Answer: A: limma. After running a differential expression analysis... Can you get the indiv
8.1 years ago arfranco ▴ 130
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4
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1.8k
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limma. After running a differential expression analysis... Can you get the individual gene expression levels between individual contrasts for each of…
limma gene expression differential gene expression
8.1 years ago arfranco ▴ 130
0
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1
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1.8k
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Answer: A: limma. After running a differential expression analysis... Can you get the indiv
8.1 years ago arfranco ▴ 130
0
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0
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1.5k
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Comment: C: RNA-seq analysis without replicates using tximport and DESeq2
9.1 years ago arfranco ▴ 130
1
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1
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3.3k
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Answer: A: Very small bug in DESeq2
9.2 years ago arfranco ▴ 130
7
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8
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3.3k
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Very small bug in DESeq2
software error
9.2 years ago arfranco ▴ 130
1
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0
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3.3k
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Comment: C: Very small bug in DESeq2
9.2 years ago arfranco ▴ 130
0
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1
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3.3k
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Answer: A: Very small bug in DESeq2
9.2 years ago arfranco ▴ 130
4
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4
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2.3k
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Limma Elist subsetting
microarray limma subsetting
9.6 years ago arfranco ▴ 130
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1
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2.3k
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Answer: A: Limma Elist subsetting
9.6 years ago arfranco ▴ 130
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1
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1.5k
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Answer: A: Methylation and gene expression data
9.6 years ago arfranco ▴ 130
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0
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2.5k
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Comment: C: Error: could not find function "HTSeqCounts"
9.7 years ago arfranco ▴ 130
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0
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2.5k
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Answer: A: Error: could not find function "HTSeqCounts"
9.7 years ago arfranco ▴ 130
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1
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2.5k
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Answer: A: Error: could not find function "HTSeqCounts"
9.7 years ago arfranco ▴ 130
0
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0
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4.7k
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Answer: A: How to import data to R
9.8 years ago arfranco ▴ 130
2
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0
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11k
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Answer: A: converting integer to numeric
10.0 years ago arfranco ▴ 130
0
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0
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2.0k
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Answer: A: Package installation errors for Bioconductor and easyRNASeq
10.0 years ago arfranco ▴ 130
9
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1
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3.7k
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limma Time Course Experiment with many time points
limma RNA-Seq
updated 10.2 years ago by ★ 29k • written 10.2 years ago by ▴ 130
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0
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955
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Answer: A: Problems with clustering a micro array data using R
10.2 years ago arfranco ▴ 130
6
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3
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21k
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limma p-value and adjusted p-value meaning
limma
10.3 years ago arfranco ▴ 130
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1
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21k
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Answer: A: limma p-value and adjusted p-value meaning
10.3 years ago arfranco ▴ 130
0
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0
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1.7k
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Comment: C: microarray agilent data
10.4 years ago arfranco ▴ 130
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1
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1.7k
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Answer: A: microarray agilent data
10.4 years ago arfranco ▴ 130
0
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0
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11k
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Answer: A: DESeq2: Starting from count tables
10.4 years ago arfranco ▴ 130
0
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0
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2.8k
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Answer: A: Normalize between Arrays (Agilent two color)
10.5 years ago arfranco ▴ 130
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0
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3.5k
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Comment: C: reading a *.txt file of expression values into an AffyBatch
10.5 years ago arfranco ▴ 130
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1
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3.5k
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Answer: A: reading a *.txt file of expression values into an AffyBatch
10.5 years ago arfranco ▴ 130
1
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1
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4.3k
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Comment: C: matrix transposing in R
10.5 years ago arfranco ▴ 130
1
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1
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4.3k
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Comment: C: matrix transposing in R
10.5 years ago arfranco ▴ 130
2
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2
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4.3k
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Answer: A: matrix transposing in R
10.5 years ago arfranco ▴ 130
2
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0
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4.3k
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Answer: A: matrix transposing in R
10.5 years ago arfranco ▴ 130
0
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0
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1.9k
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Answer: A: Newbie - Adding Labels to Individual Genes with ggbio?
10.5 years ago arfranco ▴ 130
43 results • Page 1 of 1
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