Bioconductor Subsetting

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2.2k

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r4.0 ComponentObjectModel subsetting

2.6 years ago • updated 2.5 years ago Duy Duc • 0

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4.2k

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Seqnames makeGRangesFromDataFrame GRanges Subsetting GenomicRanges

3.9 years ago rtrivedi1 ▴ 10

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1.6k

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DataFrame subsetting S4Vectors

updated 6.3 years ago by Hervé Pagès 16k • written 6.4 years ago by felix.ernst • 0

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sce singlecellexperiment scRNAseq subsetting

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by TJ • 0

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1.3k

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GRanges subsetting

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by lalchungnungabt17 • 0

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2.1k

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deseq2 subsetting plot

updated 6.9 years ago by Michael Love 43k • written 7.0 years ago by giulia.pasquesi ▴ 10

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1.7k

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GSE subsetting microarray

updated 7.5 years ago by Axel Klenk ★ 1.1k • written 7.5 years ago by A ▴ 60

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7.1k

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R genomicranges subsetting

7.6 years ago jhanks1981 • 0

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4.8k

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genomicranges genomicfeatures granges subsetting

7.7 years ago Assa Yeroslaviz ★ 1.5k

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2.7k

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biostrings aastringset subsetting

updated 8.1 years ago by Hervé Pagès 16k • written 8.1 years ago by bri.isabella • 0

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1.4k

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HTqPCR htqpcr subsetting

updated 8.3 years ago by henrik.seidel ▴ 40 • written 8.5 years ago by Guido Hooiveld ★ 4.1k

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1.2k

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subsetting gate flowcore

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by smajor • 0

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1.2k

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variantannotation subsetting

8.6 years ago Fabian Grammes ▴ 20

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2.3k

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GRanges metadata subsetting

updated 8.8 years ago by Michael Lawrence ★ 11k • written 8.8 years ago by mdeea123 ▴ 10

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7.5k

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edger subsetting dgelist

updated 8.8 years ago by Gordon Smyth 52k • written 8.8 years ago by mnaymik ▴ 10

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2.1k

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microarray limma subsetting

9.0 years ago arfranco ▴ 130

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1.8k

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subsetting eSet

9.2 years ago Shamim Sarhadi ▴ 20

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1.5k

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flowcore gate subsetting filter

updated 9.7 years ago by Jiang, Mike ★ 1.3k • written 9.7 years ago by peterfoster ▴ 20

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1.7k

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biostrings subsetting View dnastring dnaseq

updated 9.7 years ago by James W. MacDonald 68k • written 9.7 years ago by arado1 • 0

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1.5k

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RUVNormalize Subsetting

updated 9.9 years ago by laurent.jacob ▴ 10 • written 10.0 years ago by Dario Strbenac ★ 1.6k

20 results • Page 1 of 1

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Comment: parameters of filterByExpr by caroline.zanchi ▴ 10

Ah yes sorry :) But then I still do not understand why is it that on the plot I attached, the gene definitely has non-0 counts in less than…

Answer: Typo in the help of lmFit() by Gordon Smyth 52k

Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…

Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by caroline.zanchi ▴ 10

Thank you ! ![enter image description here][1] In the end I did ```r rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…

Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin by James W. MacDonald 68k

The obvious solution is to use cloud computing, which is likely cheaper than getting more RAM for your computer.

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k

``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…

Votes

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

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