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isoforms
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2
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656
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Confounding DE results with DESeq2
isoforms
DESeq2
20 months ago
arfranco
▴ 130
1
vote
9
replies
1.6k
views
Difference between gene-level test and transcript-level test with RATs (Relative Abundance of Transcrits)
RATs
RNA-Seq
Isoforms
DTU
expression
updated 4.4 years ago by
fruce_ki
▴ 20 • written 4.4 years ago by
UserAnonyme
• 0
0
votes
3
replies
1.2k
views
Downstream analysis for Salmon output: IsoformSwitchAnalyzeR or TSIS?
isoforms
diffrential expression
noncoding rna
TSIS
isoformswitchanalyzeR
5.6 years ago
rbenel
▴ 30
0
votes
0
replies
862
views
Metadata sheet for DEXSeq analysis
dexseq
differential isoform usage
isoforms
summarizeoverlaps
granges
5.7 years ago
A
▴ 40
0
votes
0
replies
1.4k
views
cummeRbund heatmap for specific isoforms (not genes)
cummerbund
heatmap
isoforms
transcript_id
6.7 years ago
domenico.somma
• 0
5
votes
18
replies
2.8k
views
Incongruencies between DEXSeq and BitSeq/Cuffdiff
dexseq
bitseq
cuffdiff
Differential exon usage
isoforms
8.5 years ago • updated 8.4 years ago
elle
▴ 10
5
votes
3
replies
2.3k
views
edgeR: annotation and isoform analysis alternatives
edgeR
ruvseq
rnaseq
isoforms
8.5 years ago
sergio.espeso-gil
• 0
1
vote
2
replies
1.3k
views
DEXSeq transcripts per condition
DEXSeq
transcripts
isoforms
updated 8.5 years ago by
Alejandro Reyes
★ 1.9k • written 8.6 years ago by
peter_venhuizen
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: NCBI protein conversion to CDNA and NCBI gene (in R)
by
Gordon Smyth
48k
Continuation of https://support.bioconductor.org/p/9155428/
Comment: Why is DMRcate not available for Bioconductor version 3.18?
by
Tim Peters
▴ 150
Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…
Comment: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
by
R_Page
• 0
Thank you, this works well. As for CDNA, I figured out what I need to find, and have made a new post regarding it.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hello Michael, I am continuing here and need your expert answer on this again I have performed small rna loci and DNA methylation mappin…
Comment: GOslim missing GO term
by
amanda
• 0
Thank you for the advice and many thanks! It is WGCNA analysis. I will try your method today and see if there are some consistencies.
Votes
Answer: Differential gene expression analysis
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Why is DMRcate not available for Bioconductor version 3.18?
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James W. MacDonald
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Assa Yeroslaviz
★ 1.5k
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Gordon Smyth
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Endre Sebestyén
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