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1.4k
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Answer:
A: Consensus Cluster Plus pre-computed distance matrix
5.5 years ago • updated 4.8 years ago
chris86
▴ 420
0
votes
0
replies
3.1k
views
Answer:
A: How can I create a mean ROC curve for multiple plotted ROC curves, R
6.0 years ago • updated 4.8 years ago
chris86
▴ 420
0
votes
1
reply
1.1k
views
Answer:
A: The order used in common practce? batch effect removel and normalization
5.0 years ago
chris86
▴ 420
1
vote
0
replies
2.2k
views
Answer:
A: Which one is more trustable for Cox Proportional Hazard Model with Lasso penalty
5.1 years ago
chris86
▴ 420
0
votes
0
replies
1.3k
views
Comment:
C: gene Isoforms quantification using RNA-seq data
5.1 years ago
chris86
▴ 420
0
votes
1
reply
1.2k
views
Comment:
C: How to apply a linear mixed model onto an RNA-Seq data?
5.1 years ago
chris86
▴ 420
0
votes
0
replies
23k
views
Comment:
C: Variance stabilising transformation for machine learning
5.1 years ago
chris86
▴ 420
0
votes
1
reply
23k
views
Comment:
C: Variance stabilising transformation for machine learning
5.1 years ago
chris86
▴ 420
0
votes
0
replies
919
views
Comment:
C: Limma classical interaction model question
5.3 years ago
chris86
▴ 420
0
votes
1
reply
919
views
Comment:
C: Limma classical interaction model question
5.3 years ago
chris86
▴ 420
0
votes
4
replies
919
views
Limma classical interaction model question
limma
updated 5.3 years ago by
Gordon Smyth
51k • written 5.3 years ago by
chris86
▴ 420
0
votes
1
reply
2.6k
views
Comment:
C: Error in reading data on isoformswitchanalyzeR
5.5 years ago
chris86
▴ 420
0
votes
1
reply
2.6k
views
Comment:
C: Error in reading data on isoformswitchanalyzeR
5.5 years ago
chris86
▴ 420
0
votes
1
reply
2.6k
views
Comment:
C: Error in reading data on isoformswitchanalyzeR
5.5 years ago
chris86
▴ 420
0
votes
1
reply
2.6k
views
Comment:
C: Error in reading data on isoformswitchanalyzeR
5.5 years ago
chris86
▴ 420
0
votes
1
reply
1.9k
views
Comment:
C: Transcript variant analysis on Salmon output
5.5 years ago
chris86
▴ 420
0
votes
1
reply
1.9k
views
Comment:
C: Transcript variant analysis on Salmon output
5.5 years ago
chris86
▴ 420
0
votes
1
reply
918
views
Comment:
C: DEXSeq With Reduced Annotations
5.6 years ago
chris86
▴ 420
0
votes
1
reply
727
views
Highly uneven mapping rates and counts between samples
limma
normalization
deseq2
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
chris86
▴ 420
0
votes
1
reply
1.3k
views
Answer:
A: feature reduction using machine learning
5.9 years ago
chris86
▴ 420
0
votes
0
replies
3.2k
views
Comment:
C: GSEA for RNA-seq analysis
6.2 years ago
chris86
▴ 420
0
votes
0
replies
3.2k
views
Answer:
A: Why do I have this perfect volcano plot from Limma?
6.2 years ago
chris86
▴ 420
0
votes
0
replies
1.9k
views
Comment:
C: Simple differential expression analysis for 2 groups
6.2 years ago
chris86
▴ 420
0
votes
1
reply
1.9k
views
Comment:
C: Simple differential expression analysis for 2 groups
6.2 years ago
chris86
▴ 420
0
votes
0
replies
957
views
Comment:
C: Dseq2 gives the same results no matter the condition ???
6.3 years ago
chris86
▴ 420
1
vote
1
reply
651
views
ANOVA in ROAST
limma
updated 6.3 years ago by
Gordon Smyth
51k • written 6.3 years ago by
chris86
▴ 420
0
votes
0
replies
1.5k
views
Comment:
C: Better to use rlog or vst transformation for data quality assessment of differen
6.3 years ago
chris86
▴ 420
0
votes
1
reply
2.6k
views
Comment:
C: novice: building gene co-expression network using RNA-Seq data
6.5 years ago
chris86
▴ 420
0
votes
0
replies
927
views
Comment:
C: Update from developers branch of bioconductor packages
6.5 years ago
chris86
▴ 420
2
votes
2
replies
927
views
Update from developers branch of bioconductor packages
bioconductor
updated 6.5 years ago by
Mike Smith
★ 6.5k • written 6.5 years ago by
chris86
▴ 420
1
vote
0
replies
1.4k
views
Comment:
C: Clustering of samples based on specific gene sets
6.6 years ago
chris86
▴ 420
0
votes
1
reply
1.4k
views
Comment:
C: Clustering of samples based on specific gene sets
6.6 years ago
chris86
▴ 420
2
votes
0
replies
943
views
Answer:
A: Is there any prerequisites for taking correlation in genomic data?
6.6 years ago
chris86
▴ 420
0
votes
0
replies
656
views
CAMERA fold changes per gene set?
limma
6.7 years ago
chris86
▴ 420
0
votes
0
replies
1.0k
views
Comment:
C: Paired factorial design model in limma
6.8 years ago
chris86
▴ 420
4
votes
2
replies
1.0k
views
Paired factorial design model in limma
limma
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
chris86
▴ 420
0
votes
0
replies
1.5k
views
Comment:
C: apply Kruskall or other non-parametric test for multiple comparisons
6.8 years ago
chris86
▴ 420
0
votes
1
reply
1.5k
views
Comment:
C: apply Kruskall or other non-parametric test for multiple comparisons
6.8 years ago
chris86
▴ 420
0
votes
1
reply
2.0k
views
Comment:
C: Probe summerization of Human HT-12 V4 BeadChip arrays
6.9 years ago
chris86
▴ 420
0
votes
0
replies
2.5k
views
Answer:
C: Normalize depth before calculating TPM
6.9 years ago
chris86
▴ 420
0
votes
1
reply
2.1k
views
Comment:
C: Differential expression between multiple groups
6.9 years ago
chris86
▴ 420
1
vote
0
replies
2.1k
views
Answer:
C: Using tximport to convert a dataframe consisting of tpm to counts for use with l
6.9 years ago
chris86
▴ 420
0
votes
0
replies
786
views
Comment:
C: Diferential expresion analysis between different microarray platforms
6.9 years ago
chris86
▴ 420
0
votes
1
reply
1.5k
views
Comment:
C: Differential gene expression of longitudinal data
6.9 years ago
chris86
▴ 420
0
votes
0
replies
5.0k
views
Comment:
C: Heat MAP TPM
7.0 years ago
chris86
▴ 420
0
votes
0
replies
5.0k
views
Answer:
A: Heat MAP TPM
7.0 years ago
chris86
▴ 420
0
votes
0
replies
2.8k
views
Answer:
A: Choosing genes for clustering
7.1 years ago
chris86
▴ 420
0
votes
0
replies
899
views
Tximport with paired and single ended reads
limma
rna-seq
bioconductor
7.1 years ago
chris86
▴ 420
2
votes
0
replies
1.5k
views
Answer:
A: Bayesian Network analysis of gene regulatory relationship
7.1 years ago
chris86
▴ 420
0
votes
0
replies
1.4k
views
Comment:
C: Some doubts about the limma package
7.1 years ago
chris86
▴ 420
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