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5.7k
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Answer: A: When is centering and scaling needed before doing hierarchical clustering?
8.5 years ago chris86 ▴ 420
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1
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1.9k
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Comment: C: Some doubts about the limma package
8.5 years ago chris86 ▴ 420
22
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8
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5.9k
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Limma camera function never gives any differentially expressed gene sets
limma
updated 8.5 years ago by • 0 • written 10.6 years ago by ▴ 420
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1
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1.1k
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Paired t-test with 2 groups, how to I tell the DEGs between them?
limma
updated 8.6 years ago by 68k • written 8.6 years ago by ▴ 420
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0
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1.4k
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Comment: C: Batch effect between paired and single ended reads
8.6 years ago chris86 ▴ 420
3
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2
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1.4k
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Batch effect between paired and single ended reads
rnaseq
updated 8.6 years ago by 53k • written 8.6 years ago by ▴ 420
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1
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4.0k
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Answer: A: Which raw files (RNAseq) to download?
8.7 years ago chris86 ▴ 420
2
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0
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1.5k
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Answer: A: gene expression data analysis and batch effect methods
8.8 years ago chris86 ▴ 420
1
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0
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2.6k
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Answer: A: Outliers - to remove or to not remove that is the question
8.8 years ago chris86 ▴ 420
2
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1
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841
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How does it work with submitting a package to the bioconductor and doing the paper together?
bioconductor
updated 8.8 years ago by 25k • written 8.8 years ago by ▴ 420
2
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2
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1.1k
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Calculating probability of getting xx genes past FDR10%
limma
updated 8.9 years ago by 53k • written 8.9 years ago by ▴ 420
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0
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5.9k
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Comment: C: illumina ht-12 v4 expression beadchip
9.0 years ago chris86 ▴ 420
1
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0
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1.5k
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Comment: C: Negative bionomial model (test) vs T test in EBseq or DEseq2
9.0 years ago chris86 ▴ 420
0
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2
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18k
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Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
9.1 years ago chris86 ▴ 420
0
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0
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18k
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Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
9.1 years ago chris86 ▴ 420
1
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0
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18k
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Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
9.1 years ago chris86 ▴ 420
1
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0
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1.1k
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Comment: C: Finding specific modules compared to consensus modules; cut-off?
9.1 years ago chris86 ▴ 420
0
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0
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5.0k
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Comment: C: GO enrichment comparison with other programs
9.2 years ago chris86 ▴ 420
0
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2
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5.0k
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Comment: C: GO enrichment comparison with other programs
9.2 years ago chris86 ▴ 420
0
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1
reply
1.4k
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Comment: C: Problem with Combat batch adjustment
9.2 years ago chris86 ▴ 420
0
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0
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1.8k
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Comment: C: ConsensusClusterPlus - function "calcICL" - How the samples are ordered in the p
9.3 years ago chris86 ▴ 420
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0
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3.6k
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Comment: C: Test whether expression levels of two gene sets are significantly different
9.3 years ago chris86 ▴ 420
0
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0
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3.6k
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Comment: C: Test whether expression levels of two gene sets are significantly different
9.3 years ago chris86 ▴ 420
0
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2
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3.6k
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Answer: A: Test whether expression levels of two gene sets are significantly different
9.3 years ago chris86 ▴ 420
0
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0
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926
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Removal of variation in dataset associated with a continuous variable
limma microarray
9.3 years ago chris86 ▴ 420
2
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1
reply
1.8k
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Answer: A: i need to have a package for reads alignment to reference genome
9.3 years ago chris86 ▴ 420
0
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0
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2.9k
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Comment: C: How to combine replicates creating heatmap?
9.4 years ago chris86 ▴ 420
0
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0
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1.5k
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Comment: C: the output DEGs of limma analyzing RNA-seq data is just 1/3 of those by Tophat-C
9.4 years ago chris86 ▴ 420
0
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1
reply
1.3k
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Comment: C: background correction for illumina array files
9.4 years ago chris86 ▴ 420
3
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3
replies
1.3k
views
background correction for illumina array files
limma microarray
updated 9.4 years ago by 53k • written 9.4 years ago by ▴ 420
0
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0
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2.2k
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Comment: C: Question about seed in ConsensusClusterPlus, can't repeat the result
9.4 years ago chris86 ▴ 420
0
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0
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1.6k
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Comment: C: How to analyze unannotated lncRNA using RNA-seq data?
9.4 years ago chris86 ▴ 420
1
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2
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1.6k
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Comment: C: How to analyze unannotated lncRNA using RNA-seq data?
9.4 years ago chris86 ▴ 420
0
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1
reply
1.2k
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Comment: C: Highly correlated, non-significant modules
9.4 years ago chris86 ▴ 420
0
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0
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1.5k
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Comment: C: ComplexHeatmap Legend labels
9.5 years ago chris86 ▴ 420
1
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1
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2.0k
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Comment: C: lumiR [Illumina] error from non-normalized data
9.5 years ago chris86 ▴ 420
0
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1
reply
11k
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Comment: C: Limma design with continuous and categorical covariates
9.5 years ago chris86 ▴ 420
0
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0
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1.9k
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Answer: A: csHeatmap - how to adjust order and number of genes displayed or change the size
9.6 years ago chris86 ▴ 420
0
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0
replies
1.2k
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Comment: C: How to obtain corrected p-value in BETR?
9.6 years ago chris86 ▴ 420
0
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0
replies
1.5k
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Comment: C: using technical replicates to batch correct
9.6 years ago chris86 ▴ 420
0
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0
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1.1k
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Comment: C: Any packages for barplot with specific features
9.6 years ago chris86 ▴ 420
0
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1
reply
1.5k
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Comment: C: using technical replicates to batch correct
9.6 years ago chris86 ▴ 420
0
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0
replies
5.8k
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Comment: C: WGCNA differences two groups 10 replicates each group
9.6 years ago chris86 ▴ 420
0
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1
reply
5.8k
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Comment: C: WGCNA differences two groups 10 replicates each group
9.6 years ago chris86 ▴ 420
0
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1
reply
5.8k
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Comment: C: WGCNA differences two groups 10 replicates each group
9.6 years ago chris86 ▴ 420
0
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0
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5.8k
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Comment: C: WGCNA differences two groups 10 replicates each group
9.6 years ago chris86 ▴ 420
0
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0
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1.5k
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Comment: C: How to decorate complexheatmap?
9.6 years ago chris86 ▴ 420
0
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1
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2.3k
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Comment: C: Method to be used in gsva() function
9.6 years ago chris86 ▴ 420
1
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0
replies
2.0k
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Comment: C: comparing transcripts expression between conditions
9.6 years ago chris86 ▴ 420
0
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1
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2.0k
views
Comment: C: comparing transcripts expression between conditions
9.6 years ago chris86 ▴ 420
179 results • Page 2 of 4
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