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Comment: C: ComBat: Adjustment for 3experimental variables
9.6 years ago chris86 ▴ 420
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1.9k
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Comment: C: analysing continuous variable with limma and correcting for covariates
9.6 years ago chris86 ▴ 420
2
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2
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1.9k
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analysing continuous variable with limma and correcting for covariates
limma microarray
updated 9.6 years ago by 68k • written 9.6 years ago by ▴ 420
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0
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1.7k
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Answer: A: Appropriate input of merged datasets regarding batch effect correction with ComB
9.6 years ago chris86 ▴ 420
0
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1
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2.7k
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Comment: C: ComBat: Adjustment for 3experimental variables
9.6 years ago chris86 ▴ 420
2
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1
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788
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illuminaHumanv4.db versus illuminaHumanv2.db beadchip annotation differences
limma microarray
updated 9.7 years ago by 68k • written 9.7 years ago by ▴ 420
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1.4k
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Answer: A: Normalizing RNA-Seq data without replicates.
9.7 years ago chris86 ▴ 420
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1
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5.8k
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Comment: C: Differential expression analysis of already normalized sequence counts
9.7 years ago chris86 ▴ 420
4
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1
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925
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How to fit a regression for a time series array experiment with limma?
limma microarray
updated 9.7 years ago by 68k • written 9.7 years ago by ▴ 420
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0
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1.2k
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Comment: C: design matrix for dge
9.7 years ago chris86 ▴ 420
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970
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Comment: C: Best approach to analyse this time series experiment
9.7 years ago chris86 ▴ 420
1
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2
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970
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Best approach to analyse this time series experiment
microarray
updated 9.7 years ago by 53k • written 9.7 years ago by ▴ 420
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0
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2.8k
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Comment: C: Can I calculate counts from the base mean and log2fc outputs of DESeq2? Also, c
9.7 years ago chris86 ▴ 420
2
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1
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1.2k
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Meta analysis of healthy and diseased data using illumina microarrays
normalization
updated 9.7 years ago by ▴ 150 • written 9.7 years ago by ▴ 420
0
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2
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1.6k
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Why are these two clustering patterns different?
bioconductor
updated 9.7 years ago by ▴ 510 • written 9.7 years ago by ▴ 420
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1
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2.9k
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Comment: C: Apply the plotPCA function in DESeq2 package to quantitative MS-based data
9.8 years ago chris86 ▴ 420
1
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1
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2.9k
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Answer: A: Apply the plotPCA function in DESeq2 package to quantitative MS-based data
9.8 years ago chris86 ▴ 420
0
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3.2k
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Comment: C: Annotation in ExpressionSet object
9.8 years ago chris86 ▴ 420
0
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1
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3.2k
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Answer: A: Annotation in ExpressionSet object
9.8 years ago chris86 ▴ 420
0
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1
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2.9k
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Comment: C: Combining data from multiple illumina microarray experiments
9.8 years ago chris86 ▴ 420
0
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0
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2.9k
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Comment: C: Combining data from multiple illumina microarray experiments
9.8 years ago chris86 ▴ 420
3
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10
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2.9k
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Combining data from multiple illumina microarray experiments
normalization limma
updated 9.8 years ago by 53k • written 9.8 years ago by ▴ 420
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0
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2.9k
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Comment: C: Combining data from multiple illumina microarray experiments
9.8 years ago chris86 ▴ 420
0
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1
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2.9k
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Comment: C: Combining data from multiple illumina microarray experiments
9.8 years ago chris86 ▴ 420
0
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1
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2.9k
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Comment: C: Combining data from multiple illumina microarray experiments
9.8 years ago chris86 ▴ 420
0
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1
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3.0k
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Comment: C: microarray data analsis with limma?
9.8 years ago chris86 ▴ 420
0
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0
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3.4k
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Comment: C: Is this the correct way of doing a paired t-test in limma using contrasts
9.8 years ago chris86 ▴ 420
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1
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1.3k
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Comment: C: design matrix for a 2 groups
9.8 years ago chris86 ▴ 420
1
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1
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1.3k
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Answer: A: design matrix for a 2 groups
9.8 years ago chris86 ▴ 420
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0
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1.4k
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Comment: C: What are the expression value of genes/probes in limma results of topTable
9.8 years ago chris86 ▴ 420
0
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1
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3.4k
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Answer: A: Is this the correct way of doing a paired t-test in limma using contrasts
9.8 years ago chris86 ▴ 420
5
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5
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3.4k
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Is this the correct way of doing a paired t-test in limma using contrasts
limma
9.8 years ago chris86 ▴ 420
2
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1
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1.2k
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Answer: A: How to calculate design matrix and conduct moderate t test to find DEGs
9.8 years ago chris86 ▴ 420
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0
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2.2k
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Answer: A: lumi package impossible to install - xtable library
9.8 years ago chris86 ▴ 420
1
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0
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2.8k
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Comment: C: Understanding the output of the exprs() function
9.8 years ago chris86 ▴ 420
0
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1
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2.8k
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Comment: C: Understanding the output of the exprs() function
9.8 years ago chris86 ▴ 420
1
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0
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2.0k
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Comment: C: comBat/SVA with no "variable of interest" and two batches
9.8 years ago chris86 ▴ 420
0
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0
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1.2k
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Comment: C: How to do contrasts in CAMERA/ROMER/ROAST/etc in Limma?
9.8 years ago chris86 ▴ 420
3
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2
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1.2k
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How to do contrasts in CAMERA/ROMER/ROAST/etc in Limma?
limma
updated 9.8 years ago by ★ 29k • written 9.8 years ago by ▴ 420
1
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1
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2.0k
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Answer: A: comBat/SVA with no "variable of interest" and two batches
9.8 years ago chris86 ▴ 420
0
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1
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1.7k
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Answer: A: How to compute Gene Regulatory Network on microarraay data
9.8 years ago chris86 ▴ 420
0
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0
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1.3k
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Answer: A: How to compute Microarray gene interaction
9.8 years ago chris86 ▴ 420
1
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1
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6.2k
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Comment: C: Heatmap of a subset of genes
9.9 years ago chris86 ▴ 420
0
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1
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6.2k
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Comment: C: Heatmap of a subset of genes
9.9 years ago chris86 ▴ 420
1
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1
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6.2k
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Answer: A: Heatmap of a subset of genes
9.9 years ago chris86 ▴ 420
0
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0
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3.0k
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Comment: C: Complexheatmap question on sorting columns
9.9 years ago chris86 ▴ 420
0
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0
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1.2k
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Comment: C: Using p.nominal DE genes from limma
9.9 years ago chris86 ▴ 420
0
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0
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1.2k
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Comment: C: Using p.nominal DE genes from limma
9.9 years ago chris86 ▴ 420
5
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5
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1.2k
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Using p.nominal DE genes from limma
limma
updated 9.9 years ago by ▴ 370 • written 9.9 years ago by ▴ 420
2
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1
reply
2.2k
views
Answer: A: Co-expression between host and pathogen genes
9.9 years ago chris86 ▴ 420
179 results • Page 3 of 4
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