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Answer: A: When is centering and scaling needed before doing hierarchical clustering?
6.7 years ago chris86 ▴ 420
0
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1
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1.3k
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Comment: C: Some doubts about the limma package
6.7 years ago chris86 ▴ 420
22
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8
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4.1k
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Limma camera function never gives any differentially expressed gene sets
limma
updated 6.7 years ago by • 0 • written 8.8 years ago by ▴ 420
1
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1
reply
894
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Paired t-test with 2 groups, how to I tell the DEGs between them?
limma
updated 6.8 years ago by 65k • written 6.8 years ago by ▴ 420
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0
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895
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Comment: C: Batch effect between paired and single ended reads
6.8 years ago chris86 ▴ 420
3
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2
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895
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Batch effect between paired and single ended reads
rnaseq
updated 6.8 years ago by 50k • written 6.8 years ago by ▴ 420
0
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1
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2.4k
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Answer: A: Which raw files (RNAseq) to download?
6.9 years ago chris86 ▴ 420
2
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0
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1.0k
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Answer: A: gene expression data analysis and batch effect methods
6.9 years ago chris86 ▴ 420
1
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0
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1.3k
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Answer: A: Outliers - to remove or to not remove that is the question
6.9 years ago chris86 ▴ 420
2
votes
1
reply
602
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How does it work with submitting a package to the bioconductor and doing the paper together?
bioconductor
updated 6.9 years ago by 25k • written 6.9 years ago by ▴ 420
2
votes
2
replies
754
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Calculating probability of getting xx genes past FDR10%
limma
updated 7.1 years ago by 50k • written 7.1 years ago by ▴ 420
1
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0
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4.1k
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Comment: C: illumina ht-12 v4 expression beadchip
7.2 years ago chris86 ▴ 420
1
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0
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1.1k
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Comment: C: Negative bionomial model (test) vs T test in EBseq or DEseq2
7.2 years ago chris86 ▴ 420
0
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2
replies
11k
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Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
7.3 years ago chris86 ▴ 420
0
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0
replies
11k
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Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
7.3 years ago chris86 ▴ 420
1
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0
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11k
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Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
7.3 years ago chris86 ▴ 420
1
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0
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806
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Comment: C: Finding specific modules compared to consensus modules; cut-off?
7.3 years ago chris86 ▴ 420
0
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0
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3.6k
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Comment: C: GO enrichment comparison with other programs
7.3 years ago chris86 ▴ 420
0
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2
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3.6k
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Comment: C: GO enrichment comparison with other programs
7.3 years ago chris86 ▴ 420
0
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1
reply
943
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Comment: C: Problem with Combat batch adjustment
7.4 years ago chris86 ▴ 420
0
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0
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1.2k
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Comment: C: ConsensusClusterPlus - function "calcICL" - How the samples are ordered in the p
7.4 years ago chris86 ▴ 420
0
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0
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2.2k
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Comment: C: Test whether expression levels of two gene sets are significantly different
7.5 years ago chris86 ▴ 420
0
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0
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2.2k
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Comment: C: Test whether expression levels of two gene sets are significantly different
7.5 years ago chris86 ▴ 420
0
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2
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2.2k
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Answer: A: Test whether expression levels of two gene sets are significantly different
7.5 years ago chris86 ▴ 420
0
votes
0
replies
631
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Removal of variation in dataset associated with a continuous variable
limma microarray
7.5 years ago chris86 ▴ 420
2
votes
1
reply
1.2k
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Answer: A: i need to have a package for reads alignment to reference genome
7.5 years ago chris86 ▴ 420
0
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0
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2.2k
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Comment: C: How to combine replicates creating heatmap?
7.5 years ago chris86 ▴ 420
0
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0
replies
1.0k
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Comment: C: the output DEGs of limma analyzing RNA-seq data is just 1/3 of those by Tophat-C
7.5 years ago chris86 ▴ 420
0
votes
1
reply
797
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Comment: C: background correction for illumina array files
7.5 years ago chris86 ▴ 420
3
votes
3
replies
797
views
background correction for illumina array files
limma microarray
updated 7.5 years ago by 50k • written 7.5 years ago by ▴ 420
0
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0
replies
1.6k
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Comment: C: Question about seed in ConsensusClusterPlus, can't repeat the result
7.5 years ago chris86 ▴ 420
0
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0
replies
1.0k
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Comment: C: How to analyze unannotated lncRNA using RNA-seq data?
7.5 years ago chris86 ▴ 420
1
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2
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1.0k
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Comment: C: How to analyze unannotated lncRNA using RNA-seq data?
7.5 years ago chris86 ▴ 420
0
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1
reply
780
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Comment: C: Highly correlated, non-significant modules
7.6 years ago chris86 ▴ 420
0
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0
replies
1.1k
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Comment: C: ComplexHeatmap Legend labels
7.7 years ago chris86 ▴ 420
1
vote
1
reply
1.6k
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Comment: C: lumiR [Illumina] error from non-normalized data
7.7 years ago chris86 ▴ 420
0
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1
reply
8.8k
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Comment: C: Limma design with continuous and categorical covariates
7.7 years ago chris86 ▴ 420
0
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0
replies
1.5k
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Answer: A: csHeatmap - how to adjust order and number of genes displayed or change the size
7.7 years ago chris86 ▴ 420
0
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0
replies
764
views
Comment: C: How to obtain corrected p-value in BETR?
7.7 years ago chris86 ▴ 420
0
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0
replies
1.1k
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Comment: C: using technical replicates to batch correct
7.7 years ago chris86 ▴ 420
0
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0
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766
views
Comment: C: Any packages for barplot with specific features
7.7 years ago chris86 ▴ 420
0
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1
reply
1.1k
views
Comment: C: using technical replicates to batch correct
7.7 years ago chris86 ▴ 420
0
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0
replies
4.0k
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Comment: C: WGCNA differences two groups 10 replicates each group
7.8 years ago chris86 ▴ 420
0
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1
reply
4.0k
views
Comment: C: WGCNA differences two groups 10 replicates each group
7.8 years ago chris86 ▴ 420
0
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1
reply
4.0k
views
Comment: C: WGCNA differences two groups 10 replicates each group
7.8 years ago chris86 ▴ 420
0
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0
replies
4.0k
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Comment: C: WGCNA differences two groups 10 replicates each group
7.8 years ago chris86 ▴ 420
0
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0
replies
1.1k
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Comment: C: How to decorate complexheatmap?
7.8 years ago chris86 ▴ 420
0
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1
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1.4k
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Comment: C: Method to be used in gsva() function
7.8 years ago chris86 ▴ 420
1
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0
replies
1.4k
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Comment: C: comparing transcripts expression between conditions
7.8 years ago chris86 ▴ 420
0
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1
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1.4k
views
Comment: C: comparing transcripts expression between conditions
7.8 years ago chris86 ▴ 420
179 results • Page 2 of 4
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