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Answer: A: Consensus Cluster Plus pre-computed distance matrix
5.1 years ago • updated 4.4 years ago chris86 ▴ 420
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2.9k
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Answer: A: How can I create a mean ROC curve for multiple plotted ROC curves, R
5.6 years ago • updated 4.4 years ago chris86 ▴ 420
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1
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884
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Answer: A: The order used in common practce? batch effect removel and normalization
4.6 years ago chris86 ▴ 420
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1.9k
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Answer: A: Which one is more trustable for Cox Proportional Hazard Model with Lasso penalty
4.7 years ago chris86 ▴ 420
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1.1k
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Comment: C: gene Isoforms quantification using RNA-seq data
4.7 years ago chris86 ▴ 420
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1
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998
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Comment: C: How to apply a linear mixed model onto an RNA-Seq data?
4.7 years ago chris86 ▴ 420
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22k
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Comment: C: Variance stabilising transformation for machine learning
4.7 years ago chris86 ▴ 420
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1
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22k
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Comment: C: Variance stabilising transformation for machine learning
4.7 years ago chris86 ▴ 420
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764
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Comment: C: Limma classical interaction model question
4.9 years ago chris86 ▴ 420
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1
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764
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Comment: C: Limma classical interaction model question
4.9 years ago chris86 ▴ 420
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4
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764
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Limma classical interaction model question
limma
updated 4.9 years ago by 50k • written 4.9 years ago by ▴ 420
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1
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2.2k
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Comment: C: Error in reading data on isoformswitchanalyzeR
5.1 years ago chris86 ▴ 420
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1
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2.2k
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Comment: C: Error in reading data on isoformswitchanalyzeR
5.1 years ago chris86 ▴ 420
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1
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2.2k
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Comment: C: Error in reading data on isoformswitchanalyzeR
5.1 years ago chris86 ▴ 420
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1
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2.2k
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Comment: C: Error in reading data on isoformswitchanalyzeR
5.1 years ago chris86 ▴ 420
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1
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1.6k
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Comment: C: Transcript variant analysis on Salmon output
5.1 years ago chris86 ▴ 420
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1
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1.6k
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Comment: C: Transcript variant analysis on Salmon output
5.1 years ago chris86 ▴ 420
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1
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804
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Comment: C: DEXSeq With Reduced Annotations
5.1 years ago chris86 ▴ 420
0
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1
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592
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Highly uneven mapping rates and counts between samples
limma normalization deseq2
updated 5.2 years ago by ★ 28k • written 5.2 years ago by ▴ 420
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1
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1.2k
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Answer: A: feature reduction using machine learning
5.4 years ago chris86 ▴ 420
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2.6k
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Comment: C: GSEA for RNA-seq analysis
5.7 years ago chris86 ▴ 420
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0
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2.8k
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Answer: A: Why do I have this perfect volcano plot from Limma?
5.7 years ago chris86 ▴ 420
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0
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1.8k
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Comment: C: Simple differential expression analysis for 2 groups
5.8 years ago chris86 ▴ 420
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1
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1.8k
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Comment: C: Simple differential expression analysis for 2 groups
5.8 years ago chris86 ▴ 420
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818
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Comment: C: Dseq2 gives the same results no matter the condition ???
5.8 years ago chris86 ▴ 420
1
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1
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584
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ANOVA in ROAST
limma
updated 5.9 years ago by 50k • written 5.9 years ago by ▴ 420
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1.3k
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Comment: C: Better to use rlog or vst transformation for data quality assessment of differen
5.9 years ago chris86 ▴ 420
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1
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2.3k
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Comment: C: novice: building gene co-expression network using RNA-Seq data
6.0 years ago chris86 ▴ 420
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0
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815
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Comment: C: Update from developers branch of bioconductor packages
6.1 years ago chris86 ▴ 420
2
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2
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815
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Update from developers branch of bioconductor packages
bioconductor
updated 6.1 years ago by ★ 6.5k • written 6.1 years ago by ▴ 420
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0
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1.2k
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Comment: C: Clustering of samples based on specific gene sets
6.2 years ago chris86 ▴ 420
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1
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1.2k
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Comment: C: Clustering of samples based on specific gene sets
6.2 years ago chris86 ▴ 420
2
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846
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Answer: A: Is there any prerequisites for taking correlation in genomic data?
6.2 years ago chris86 ▴ 420
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0
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606
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CAMERA fold changes per gene set?
limma
6.3 years ago chris86 ▴ 420
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0
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962
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Comment: C: Paired factorial design model in limma
6.4 years ago chris86 ▴ 420
4
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2
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962
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Paired factorial design model in limma
limma
updated 6.4 years ago by ★ 28k • written 6.4 years ago by ▴ 420
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1.4k
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Comment: C: apply Kruskall or other non-parametric test for multiple comparisons
6.4 years ago chris86 ▴ 420
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1
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1.4k
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Comment: C: apply Kruskall or other non-parametric test for multiple comparisons
6.4 years ago chris86 ▴ 420
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1
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1.8k
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Comment: C: Probe summerization of Human HT-12 V4 BeadChip arrays
6.4 years ago chris86 ▴ 420
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0
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2.3k
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Answer: C: Normalize depth before calculating TPM
6.4 years ago chris86 ▴ 420
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1
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2.0k
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Comment: C: Differential expression between multiple groups
6.4 years ago chris86 ▴ 420
1
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0
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2.0k
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Answer: C: Using tximport to convert a dataframe consisting of tpm to counts for use with l
6.5 years ago chris86 ▴ 420
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0
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687
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Comment: C: Diferential expresion analysis between different microarray platforms
6.5 years ago chris86 ▴ 420
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1
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1.4k
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Comment: C: Differential gene expression of longitudinal data
6.5 years ago chris86 ▴ 420
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0
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4.3k
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Comment: C: Heat MAP TPM
6.5 years ago chris86 ▴ 420
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4.3k
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Answer: A: Heat MAP TPM
6.5 years ago chris86 ▴ 420
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0
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2.5k
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Answer: A: Choosing genes for clustering
6.6 years ago chris86 ▴ 420
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0
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850
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Tximport with paired and single ended reads
limma rna-seq bioconductor
6.7 years ago • updated 6.6 years ago chris86 ▴ 420
2
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0
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1.4k
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Answer: A: Bayesian Network analysis of gene regulatory relationship
6.6 years ago chris86 ▴ 420
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0
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1.3k
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Comment: C: Some doubts about the limma package
6.7 years ago chris86 ▴ 420
179 results • Page 1 of 4
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