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Comment: C: Using DESeq2 normalisation method on a tximport list of matrices without sample
6.6 years ago user31888 ▴ 30
2
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2
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1.4k
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Using DESeq2 normalisation method on a tximport list of matrices without sample information
deseq2
updated 6.7 years ago by ★ 13k • written 6.7 years ago by ▴ 30
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1.4k
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Comment: C: How to obtain a normalised expression matrix from read counts and scaling factor
6.7 years ago user31888 ▴ 30
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2
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1.4k
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Comment: C: How to obtain a normalised expression matrix from read counts and scaling factor
6.7 years ago user31888 ▴ 30
6
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5
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1.4k
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How to obtain a normalised expression matrix from read counts and scaling factors
edger
updated 6.7 years ago by ★ 7.9k • written 6.7 years ago by ▴ 30
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0
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4.8k
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Comment: C: Create Ensembl transcript to gene IDs table with R ensembldb package for tximpor
6.7 years ago user31888 ▴ 30
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3
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4.8k
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Create Ensembl transcript to gene IDs table with R ensembldb package for tximport
ensembldb tximport salmon
updated 6.7 years ago by ★ 2.1k • written 6.7 years ago by ▴ 30
0
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0
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1.3k
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VIPER (Protein Activity Inference) gene expression signature format
VIPER aracne.networks
7.9 years ago user31888 ▴ 30
0
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0
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1.5k
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GAGE from DESeq: pairwise comparison between 1 reference and 3 samples
gage deseq pathview
7.9 years ago user31888 ▴ 30
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0
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1.8k
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Comment: C: GAGE and Pathview from RNA-Seq: 'ref.idx' and 'samp.idx' when no replicates
8.1 years ago user31888 ▴ 30
0
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2
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1.8k
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GAGE and Pathview from RNA-Seq: 'ref.idx' and 'samp.idx' when no replicates
GAGE pathview
updated 8.1 years ago by ★ 1.6k • written 8.1 years ago by ▴ 30
1
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0
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12k
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Comment: C: Pathview: *** caught segfault *** cause 'memory not mapped'
8.1 years ago user31888 ▴ 30
8
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13
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12k
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Pathview: *** caught segfault *** cause 'memory not mapped'
pathview segfault
updated 8.5 years ago by ▴ 40 • written 9.1 years ago by ▴ 30
0
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0
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2.0k
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Comment: C: Install SomaticSignatures (ERROR: compilation failed for package 'RBGL')
8.7 years ago user31888 ▴ 30
0
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1
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2.0k
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Comment: C: Install SomaticSignatures (ERROR: compilation failed for package 'RBGL')
8.7 years ago user31888 ▴ 30
0
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5
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2.0k
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Install SomaticSignatures (ERROR: compilation failed for package 'RBGL')
somaticsignatures RGBL
8.7 years ago user31888 ▴ 30
0
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0
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12k
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Comment: C: Pathview: *** caught segfault *** cause 'memory not mapped'
9.1 years ago user31888 ▴ 30
0
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1
reply
12k
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Comment: C: Pathview: *** caught segfault *** cause 'memory not mapped'
9.1 years ago user31888 ▴ 30
0
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0
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1.7k
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Comment: C: GAGE from Cuffdiff workflow: Error in names(cuff.fc) = gnames : attempt to set a
9.1 years ago user31888 ▴ 30
0
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2
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1.7k
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GAGE from Cuffdiff workflow: Error in names(cuff.fc) = gnames : attempt to set an attribute on NULL
GAGE Cuffdiff gene names
updated 9.1 years ago by ★ 1.6k • written 9.1 years ago by ▴ 30
0
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1
reply
3.2k
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Comment: C: GAGE pathway analysis (R/Bioconductor): summarizeOverlaps error
9.2 years ago user31888 ▴ 30
0
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0
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2.4k
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Cannot install GAGE (and its dependencies): libpng16.so.16 not found
GAGE libpn
9.2 years ago user31888 ▴ 30
0
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1
reply
3.2k
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Comment: C: GAGE pathway analysis (R/Bioconductor): summarizeOverlaps error
9.2 years ago user31888 ▴ 30
2
votes
5
replies
3.2k
views
GAGE pathway analysis (R/Bioconductor): summarizeOverlaps error
summarizeoverlaps GAGE
updated 9.2 years ago by ★ 6.8k • written 9.2 years ago by ▴ 30
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