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Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
by
James W. MacDonald
68k
Probably not. Any given gene may be appended with many different GO terms, so you would end up with something that is not very useful.
``…
Comment: Heatmap of rnaseq data with z-score scale
by
James W. MacDonald
68k
`heatmap.2` is a CRAN package, and that's the relevant issue for this plot. It's got nothing to do with `DESeq2` or any other Bioconductor …
Comment: Limma suqeezeVar
by
Mengchun
•
0
Hi Gordon,
Thank you for your reply. I'm working on a proteomics data imputation project, I would like to describe the intensity distribut…
Comment: Heatmap of rnaseq data with z-score scale
by
giovanna
•
0
thank you for your reply. I'm sorry if the question is off topic. the analysis and relative construction of the heatmap was done using bioc…
Answer: Heatmap of rnaseq data with z-score scale
by
James W. MacDonald
68k
Without including the row names for the heatmap, it's impossible to know if the directionality is switched or not. Do note that the orderin…
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