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Answer: A: EdgeR RNAseq -- best way to deal with random effects
4.4 years ago gil.hornung • 0
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1
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1.1k
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Comment: C: limma with paired samples and a continuous variable
5.0 years ago gil.hornung • 0
1
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3
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1.1k
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limma with paired samples and a continuous variable
limma
updated 5.0 years ago by ★ 28k • written 5.0 years ago by • 0
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1
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828
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Why does the Glimma package require R >= 3.4.0 ?
glimma
updated 6.1 years ago by ▴ 40 • written 6.1 years ago by • 0
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0
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2.0k
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Answer: A: Affymetrix Mogene 1 0 ST
6.2 years ago gil.hornung • 0
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1.8k
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Comment: C: Strong upwards correlation between log fold change and average log expression in
6.5 years ago gil.hornung • 0
5
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3
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1.8k
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Strong upwards correlation between log fold change and average log expression in MD plot of Limma
limma proteomics
updated 6.5 years ago by 50k • written 6.5 years ago by • 0
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1.2k
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Comment: C: Differential ChIP-seq with csaw: How to normalise counts on repetitive regions (
6.6 years ago gil.hornung • 0
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2
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1.2k
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Differential ChIP-seq with csaw: How to normalise counts on repetitive regions (telomers)?
csaw histone chip-seq chip-seq
updated 6.6 years ago by ★ 28k • written 6.6 years ago by • 0
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1
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12k
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Comment: C: pre-ranked GSEA within R?
7.8 years ago gil.hornung • 0
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6.1k
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Comment: C: "Over-correction" in the size-factors of the DESeq2 package
8.0 years ago gil.hornung • 0
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2
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6.1k
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Comment: C: "Over-correction" in the size-factors of the DESeq2 package
8.0 years ago gil.hornung • 0
0
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2
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6.1k
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Comment: C: "Over-correction" in the size-factors of the DESeq2 package
8.0 years ago gil.hornung • 0
0
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1
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6.1k
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Comment: C: "Over-correction" in the size-factors of the DESeq2 package
8.0 years ago gil.hornung • 0
1
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13
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6.1k
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"Over-correction" in the size-factors of the DESeq2 package
deseq2 rna-seq normalization
8.0 years ago gil.hornung • 0
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1.1k
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Comment: C: Error when trying to load a gff3 with GenomicFeatures
8.0 years ago gil.hornung • 0
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2
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1.1k
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Error when trying to load a gff3 with GenomicFeatures
genomicfeatures
updated 8.1 years ago by ★ 6.5k • written 8.1 years ago by • 0
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0
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2.5k
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Comment: C: NA in padj in the DEXSeq package
8.3 years ago gil.hornung • 0
0
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1
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2.5k
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Answer: A: NA in padj in the DEXSeq package
8.3 years ago gil.hornung • 0
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5
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2.5k
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NA in padj in the DEXSeq package
dexseq padj
8.3 years ago gil.hornung • 0
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0
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2.5k
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Answer: A: NA in padj in the DEXSeq package
8.3 years ago gil.hornung • 0
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