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1.6k
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Mitigating cell cycle effect in scRNA-seq using a blocking factor or design matrix
scran
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
s1437643
▴ 20
0
votes
0
replies
1.2k
views
Comment:
C: In which order should you detect empty droplets / remove barcode swapping using
5.9 years ago
s1437643
▴ 20
0
votes
0
replies
909
views
Comment:
C: Support for BSgenomeViews objects in matchPWM
6.8 years ago
s1437643
▴ 20
0
votes
2
replies
909
views
Support for BSgenomeViews objects in matchPWM
biostrings
6.8 years ago
s1437643
▴ 20
2
votes
4
replies
2.2k
views
One-way hypothesis test in limma
limma
updated 4.0 years ago by
Aaron Lun
★ 28k • written 6.9 years ago by
s1437643
▴ 20
0
votes
0
replies
2.2k
views
Comment:
C: One-way hypothesis test in limma
6.9 years ago
s1437643
▴ 20
0
votes
0
replies
1.5k
views
Comment:
C: Aggregate read counts by non-uniform overlapping sliding windows
8.1 years ago
s1437643
▴ 20
6
votes
4
replies
1.5k
views
Aggregate read counts by non-uniform overlapping sliding windows
granges
genomicranges
featurecounts
updated 8.1 years ago by
Michael Lawrence
★ 11k • written 8.1 years ago by
s1437643
▴ 20
0
votes
0
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1.6k
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Comment:
C: Programatically download correct genome wide annotation package for given organi
8.1 years ago
s1437643
▴ 20
1
vote
2
replies
1.6k
views
Programatically download correct genome wide annotation package for given organism/assembly
annotationdbi
organismdbi
updated 8.1 years ago by
Johannes Rainer
★ 2.1k • written 8.1 years ago by
s1437643
▴ 20
4
votes
2
replies
2.7k
views
Removing GC content bias and trended bias from ChIP-seq data
csaw
chip-seq
normalization
edger
cqn
updated 8.4 years ago by
Aaron Lun
★ 28k • written 8.4 years ago by
s1437643
▴ 20
0
votes
2
replies
915
views
How to retrieve ranges within 1000bp of each range in an IRanges object?
IRanges
updated 9.1 years ago by
Michael Lawrence
★ 11k • written 9.1 years ago by
s1437643
▴ 20
0
votes
0
replies
1.3k
views
What is the difference between 'sigma' and 'sig2' in CQN package?
cqn
sqn
9.1 years ago
s1437643
▴ 20
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