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7
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LRT, more than two conditions and pairwise comparisons
DESeq2
1 hour ago
boczniak767
▴ 720
0
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0
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10
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How to run allelic imbalance in apeglm
apeglm
1 hour ago
euge.eugenio
▴ 20
7
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5
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542
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Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it does not happen in Linux
GenomAutomorphism
13 days ago • updated 2 hours ago
robersy
• 0
0
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4
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59
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all variables in design formula must be columns in colData (Deseq2) error
BatchQC
batchinDeseq2.
columnsincolData.
10 hours ago • updated 21 minutes ago
Galina
• 0
0
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0
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18
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scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
RNASeq
scRNAseq
8 hours ago • updated 7 hours ago
Bibi
• 0
0
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1
reply
57
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Subsetting RNAseq data | voomaByGroup()
limma
updated 6 hours ago by
Gordon Smyth
50k • written 1 day ago by
Anna
• 0
0
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4
replies
377
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Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
2 days ago • updated 2 hours ago
Ken C
• 0
0
votes
0
replies
31
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ERROR; return code from pthread_create() is 22
affy
1 day ago • updated 11 hours ago
pickingastar
• 0
0
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0
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36
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Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets
allele_freq
biomaRt
getBM
1 day ago • updated 10 hours ago
Abiologist
• 0
9 results • Page
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Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
robersy
• 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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