Bioconductor Forum

vote

replies

166

views

apeglm

written 11 days ago by euge.eugenio ▴ 20

vote

replies

772

views

SpliceWiz

updated 2 hours ago by giulia.nicoletto.1 • 0 • written 16 months ago by chiara.caprioli • 0

vote

replies

views

DESeq2 rnaseqGene

updated 1 hour ago by Ram ▴ 210 • written 5 hours ago by Sudip • 0

votes

replies

171

views

DESeq2

updated 6 hours ago by Michael Love 42k • written 2 days ago by ennui • 0

votes

views

DESeq2

updated 3 hours ago by SamGG ▴ 350 • written 4 hours ago by YouCook • 0

votes

replies

views

scds

2 hours ago Lluís Revilla Sancho ▴ 730

votes

replies

views

microbiomeMarker

15 hours ago Jay • 0

votes

replies

291

views

Biostrings

updated 11 hours ago by ATpoint ★ 4.2k • written 3 days ago by Ali Osman • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: Deseq2 by Ram ▴ 210

Cross-posted on biostars: https://www.biostars.org/p/9596031/

Comment: SpliceWiz collateData error by giulia.nicoletto.1 • 0

Hi there, I am facing a similar error. When I try the collateData command collateData( Experiment = expr, reference_path = "./Referen…

Answer: Best way to describe DEseq2 design by SamGG ▴ 350

Hi, My own opinion. In the design `~ Batch`, ChemicalA_t1 is the intercept. So, all coefficients refer to this level as a reference. …

Answer: Deseq2 by ATpoint ★ 4.2k

Ser the vignette https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html It covers prefiltering (and everyt…

Comment: Counter-directional LFC shrinkage by Michael Love 42k

Gene 1 is hard to predict given the paucity of data for the comparison of interest. What is happening is that the relatively low dispersion…

Votes

Answer: Deseq2

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: When should I correct for batch effects

Awards • All

Popular Question to Levi Waldron ★ 1.1k

Popular Question to Laure Cougnaud ▴ 20