Showing : rnaseqGene • reset
3
votes
5
replies
243
views
A question occur when using DESeq2 on a complex design
DESeq2 rnaseqGene RNASeq
1 day ago MedocRafael • 0
0
votes
3
replies
210
views
Trouble with creating Series RNA-seq normalized counts matrix
GEO rnaseqGene RNA
4 days ago • updated 3 days ago gallantk5 • 0
0
votes
0
replies
149
views
Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution rnaseqGene RNAseq
29 days ago JG13 • 0
2
votes
2
replies
318
views
Control group between 2 batches have different expression in RNAseq data
BatchQC BatchEffect rnaseqGene Normalization
updated 7 weeks ago by • 0 • written 9 weeks ago by • 0
1
vote
2
replies
269
views
Deseq2
DESeq2 rnaseqGene
updated 8 weeks ago by ▴ 210 • written 8 weeks ago by • 0
0
votes
1
reply
213
views
normalization using Deseq2
DESeq2 rnaseqGene Normalization
updated 11 weeks ago by ★ 4.2k • written 11 weeks ago by • 0
2
votes
7
replies
685
views
deseq2 results
DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation
11 weeks ago • updated 10 weeks ago sajadahmad41454 • 0
0
votes
2
replies
388
views
RNAseq analysis
rnaseqGene edgeR DEGraph DifferentialExpression
updated 4 months ago by 51k • written 4 months ago by • 0
3
votes
5
replies
802
views
DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 4 months ago by 42k • written 5 months ago by ▴ 10
2
votes
1
reply
300
views
Continuous variable to identify responder genes using DESeq2
DESeq2 rnaseqGene DifferentialExpression
updated 5 months ago by 42k • written 5 months ago by ▴ 20
5
votes
6
replies
720
views
Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
6 months ago Shaimaa Gamal • 0
1
vote
4
replies
682
views
rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 8 months ago by 42k • written 8 months ago by ▴ 60
0
votes
2
replies
1.0k
views
R could not could not find function "makeTxDbFromGFF" after loading (GenomicFeatures)
rnaseqGene
updated 12 months ago by 42k • written 12 months ago by • 0
1
vote
3
replies
929
views
Bulk RNA seq with deseq2, rnaseqGene, or edgeR
DESeq2 edgeR rnaseqGene
updated 18 months ago by 42k • written 18 months ago by • 0
0
votes
3
replies
1.9k
views
Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 20 months ago by 66k • written 20 months ago by • 0
1
vote
2
replies
905
views
toptable sort .by set
limma rnaseqGene
2.2 years ago snowmattin • 0
0
votes
1
reply
941
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 2.6 years ago by ★ 4.2k • written 2.6 years ago by • 0
6
votes
10
replies
1.6k
views
rnaseqGene: Different output when generating step by step airway dataset
tximeta DESeq2 rnaseqGene
updated 2.7 years ago by 42k • written 2.7 years ago by ▴ 20
4
votes
1
reply
2.2k
views
mitochondrial RNA percentage in bulk RNAseq data
rnaseqGene RNASeqR DESeq2 RNAseq
updated 2.8 years ago by 42k • written 2.8 years ago by ▴ 10
2
votes
2
replies
906
views
Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
2.8 years ago • updated 14 months ago diangomaiga • 0
2
votes
2
replies
1.8k
views
DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
3.1 years ago SUMIT • 0
0
votes
0
replies
800
views
display .CT files in a BioC package
RNAinteract rnaseqGene RNASeqRData rnaseqcomp
3.5 years ago Bogdan ▴ 670
1
vote
6
replies
1.5k
views
Contamination in bulkseq samples. Looking at correlated genes?
RNASeqData DESeq2 rnaseqGene
3.5 years ago Seaweed • 0
3
votes
3
replies
944
views
A problem about RNA-seq workflow:9 Time course experiments
rnaseqgene
updated 4.2 years ago by 42k • written 4.2 years ago by ▴ 40
1
vote
3
replies
843
views
typo in rnaseqGene workflow vignette.
rnaseqGene workflow deseq2
updated 4.5 years ago by 42k • written 4.5 years ago by ★ 1.5k
0
votes
7
replies
3.1k
views
Issue installing RNA-seq workflow
software error deseq2 workflow rnaseqGene
updated 5.1 years ago by 25k • written 5.1 years ago by • 0
0
votes
2
replies
986
views
DESEQ2: rnaseqGene fisison tutorial time course graph has non-numerical x-axis
deseq2 rnaseqGene
5.4 years ago courtney.stairs • 0
1
vote
2
replies
1.3k
views
how to install package of "rnaseqGene" for R (ver: 3.5.2) for windows
rnaseqGene
updated 5.5 years ago by 66k • written 5.5 years ago by ▴ 10
3
votes
5
replies
8.2k
views
How to find Top 10 expressed genes in DESeq2
deseq2 baseMean differential gene expression rnaseqgene
updated 5.5 years ago by ★ 1.4k • written 5.5 years ago by • 0
1
vote
3
replies
1.4k
views
how to find expressed genes in RNAseq
deseq2 rnaseq differential gene expression featurecounts rnaseqGene
5.6 years ago melkile26 • 0
2
votes
5
replies
1.7k
views
Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
rnaseq rnaseqgene R 3.4.2 Mac
updated 6.3 years ago by 3.9k • written 6.3 years ago by • 0
0
votes
2
replies
1.4k
views
Is there a data package containing complex RNA-Seq data?
RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene
updated 6.4 years ago by ▴ 160 • written 6.4 years ago by • 0
0
votes
1
reply
1.8k
views
can't install workflow "rnaseqGene" with Bioconductor version3.3
bioconductor workflowinstall error rnaseqgene
updated 8.1 years ago by ★ 6.8k • written 8.1 years ago by ▴ 20
0
votes
4
replies
1.9k
views
workflow.R in BioC 3.3
workflows rnaseqgene
updated 8.2 years ago by • 0 • written 8.2 years ago by • 0
2
votes
5
replies
3.1k
views
Programs used in RNA-seq workflow
deseq2 bioconductor workflows differential gene expression rnaseqgene
8.3 years ago cirisarri95 • 0
0
votes
1
reply
2.1k
views
Unable to access index for repository... rnaseqGene sequencing workflows
rnaseqGene genomic sequencing
updated 8.7 years ago by ★ 8.2k • written 8.7 years ago by • 0
0
votes
6
replies
4.0k
views
Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) :
R differential expression rnaseqgene
8.8 years ago JunLVI ▴ 40
3
votes
2
replies
1.8k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 9.0 years ago by 66k • written 9.1 years ago by • 0
6
votes
8
replies
2.5k
views
error in RNA-Seq workflow at the gene level
rnaseqgene genomicalignments
updated 9.1 years ago by ★ 8.2k • written 9.1 years ago by • 0
0
votes
2
replies
3.2k
views
Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 deseqdataset rnaseqgene fastq reference genome
updated 9.2 years ago by 66k • written 9.2 years ago by • 0
0
votes
2
replies
5.4k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
9.3 years ago greg.mulhearn • 0
0
votes
3
replies
1.8k
views
Questions regarding convertIDs in the rnaseqGene Package
rnaseqGene convertIDs
9.3 years ago Cheng-Yuan Kao ▴ 100
0
votes
0
replies
1.3k
views
Minor error in the RNASeqGene workflow
rnaseqgene
9.4 years ago snf ▴ 10
43 results • Page 1 of 1
Recent ...
Replies
Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta by Guido Hooiveld ★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta by Michael Love 42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
Awards • All
Popular Question to Lluís Revilla Sancho ▴ 730
Popular Question to maltethodberg ▴ 180
Scholar to Michael Love 42k
Popular Question to Leonardo Collado Torres ★ 1.1k
Scholar to Gordon Smyth 51k
Locations • All
United States, just now
WEHI, Melbourne, Australia, 18 minutes ago
United States, 20 minutes ago
France, 36 minutes ago
Slovakia, 43 minutes ago
Traffic: 693 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6