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scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
RNASeq
scRNAseq
2 hours ago • updated 1 hour ago
Bibi
• 0
0
votes
1
reply
26
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all variables in design formula must be columns in colData (Deseq2) error
BatchQC
batchinDeseq2.
columnsincolData.
updated 56 minutes ago by
ATpoint
★ 4.1k • written 4 hours ago by
Galina
• 0
0
votes
1
reply
56
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Subsetting RNAseq data | voomaByGroup()
limma
updated 1 hour ago by
Gordon Smyth
50k • written 1 day ago by
Anna
• 0
0
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0
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28
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ERROR; return code from pthread_create() is 22
affy
1 day ago • updated 5 hours ago
pickingastar
• 0
0
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0
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34
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Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets
allele_freq
biomaRt
getBM
1 day ago • updated 4 hours ago
Abiologist
• 0
0
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2
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109
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DESeq2- Mysterious interaction suppresses DEGs
DESeq2
PCAplot
RNA-Seq
DesignModel
updated 23 hours ago by
Michael Love
42k • written 1 day ago by
shaunpeterson
• 0
0
votes
2
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337
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Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
updated 23 hours ago by
Michael Love
42k • written 2 days ago by
Ken C
• 0
7 results • Page
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Answer: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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