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read.marrayRaw()
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human tissue specific genes
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21.5 years ago grandi folia ▴ 20
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updated 21.5 years ago by ★ 2.9k • written 21.5 years ago by ▴ 210
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updated 21.5 years ago by ▴ 80 • written 21.5 years ago by ▴ 430
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21.5 years ago Matthew Hahn ▴ 10
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updated 21.5 years ago by 68k • written 21.5 years ago by ▴ 100
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21.5 years ago Liu, Xin ▴ 120
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21.5 years ago Peter Baker CMIS, Indooroopilly ▴ 80
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updated 21.5 years ago by ▴ 60 • written 21.5 years ago by ▴ 120
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21.5 years ago Dixon, Dr R. ▴ 20
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Limma design matrix
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updated 21.5 years ago by ▴ 950 • written 21.5 years ago by ▴ 20
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21.5 years ago James W. MacDonald 68k
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21.5 years ago Marcus Albrecht ▴ 20
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21.5 years ago Paul Boutros ▴ 340
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21.5 years ago Kimpel, Mark W ▴ 890
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updated 21.5 years ago by ★ 5.5k • written 21.5 years ago by ▴ 60
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updated 21.5 years ago by ★ 5.5k • written 21.5 years ago by ▴ 500
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cdf cdf
updated 21.5 years ago by ★ 3.9k • written 21.5 years ago by ▴ 180
0
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21.5 years ago Max_Kuhn@bd.com ▴ 20
46,717 results • Page 887 of 935
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Replies
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0
@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…
Comment: Clarification on counting in Rsubread (featureCounts) by Luca • 0
Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …
Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …
Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner ▴ 20
You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
Awards • All
Commentator to James W. MacDonald 68k
Great Question to fl ▴ 20
Popular Question to Lluís Revilla Sancho ▴ 760
Popular Question to Gordon Smyth 53k
Popular Question to Aleena_Ensembl ▴ 30
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