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Created An Answer With At Least 3 Up-Votes
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following contributors:
9 years, 8 months ago
The city by the bay
Error when calculating DE using the classical approach in edgeR
9 years, 8 months ago
The city by the bay
Differential expression analysis: comparison of DESeq2 and edgeR robust results
9 years, 8 months ago
The city by the bay
csaw - workflow to incorporate input/control samples?
9 years, 8 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
9 years, 8 months ago
The city by the bay
Is it valid to use only genes of interest before eBayes step in limma?
9 years, 8 months ago
The city by the bay
ROAST after edgeR glmTreat and average RPKM filter
9 years, 8 months ago
The city by the bay
Mutation effect on expression (RNA-Seq) using limma
9 years, 8 months ago
The city by the bay
How to do contrasts in CAMERA/ROMER/ROAST/etc in Limma?
9 years, 8 months ago
The city by the bay
limma Time Course Experiment with many time points
9 years, 8 months ago
The city by the bay
how to use edgeR analysis RNA-seq data with a obvious deviation sample
9 years, 8 months ago
The city by the bay
DE for genes with very low counts using limma.
9 years, 8 months ago
The city by the bay
deseq2, edger different number of replicates and extraction kit
9 years, 8 months ago
The city by the bay
Design matrix and contrast for RNA knockdown experiment
9 years, 8 months ago
United Kingdom
biomaRt: no access to Ensembl_75 (GRCh37.p13)
9 years, 8 months ago
United States
Plotting only intergenic reads on chromosomes?
9 years, 8 months ago
United States
BPPARAM = bpparam() takes longer than using BPPARAM = SerialParam()
9 years, 8 months ago
United States
finding overlapping regions within 2 different bed files with different features
9 years, 8 months ago
United States
Any way to proceed duplicate removal for list of GRanges object ?
9 years, 8 months ago
United States
Offline loading of BiocInstaller or depending packages and connection timeout
9 years, 8 months ago
United States
getting the longest transcript by gene from Refseq
9 years, 8 months ago
United States
How to convert a GRangesList object into a GRanges object?
9 years, 8 months ago
United States
bplapply stalling upon error with large data objects
9 years, 8 months ago
United States
IRanges, Partitioning by End function not found.
9 years, 8 months ago
United States
Filtering lowly expressed genes in voom-limma analysis
9 years, 8 months ago
United States
Counting ambiguously mapped reads per feature
9 years, 8 months ago
United States
Perform limma on a subset of genes of interest
9 years, 8 months ago
EMBL Heidelberg
Restricting seqlevels to chr1-chr22, chrX, chrY in TxDb from UCSC returns more genes than without restriction
9 years, 8 months ago
Italy
makeTxDbFromBiomart Error: 1: Space required after the Public Identifier
9 years, 8 months ago
United States
How to find particular types of overlap with GenomicRanges
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