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Created An Answer With At Least 3 Up-Votes
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following contributors:
9 years, 6 months ago
United States
A: Error in assay colnames when defining DESeqDataSetFromMatrix following R update
9 years, 6 months ago
The city by the bay
A: Very low EdgeR Pvalues with very small sample size
9 years, 6 months ago
Seattle, WA, United States
A: makeTxDbFromGFF Error: subscript contains NAs or out-of-bounds indices - after p
9 years, 6 months ago
The city by the bay
A: Getting normalized read counts from region counts
9 years, 6 months ago
United States
A: How to fit a regression for a time series array experiment with limma?
9 years, 6 months ago
The city by the bay
A: how duplicates reads would affect Differential expression analysis results
9 years, 6 months ago
The city by the bay
A: design matrix - control for biological replicates
9 years, 6 months ago
The city by the bay
A: Plot normalized expression or count values for a specific gene in limma
9 years, 7 months ago
Icahn School of Medicine at Mount Sinai…
A: How to use removeBatchEffect for removing effect of multiple confounding variabl
9 years, 7 months ago
United States
A: How to do a confounding variable adjustment without using the treatment informat
9 years, 7 months ago
Seattle, WA, United States
A: How to get the intersect and get the difference of a grange object while keeping
9 years, 7 months ago
Seattle, WA, United States
A: XStringSet operations discard names - how to address?
9 years, 7 months ago
The city by the bay
A: Differential expression analysis: comparison of DESeq2 and edgeR robust results
9 years, 7 months ago
WEHI, Melbourne, Australia
A: microarray data analsis with limma?
9 years, 8 months ago
The city by the bay
A: Extremely Big Number of Differences from Multi-level Design in RNA-seq Analysis
9 years, 8 months ago
Australia/Melbourne
A: Hisat2 vs featureCounts summary statistics
9 years, 8 months ago
The city by the bay
A: Detection of methylated regions from MeDIP data using csaw
9 years, 8 months ago
China/Guangzhou/Southern Medical Univer…
A: help with clusterProfiler enricher function
9 years, 8 months ago
United States
A: Get internal exons using GenomicFeatures
9 years, 8 months ago
The city by the bay
A: csaw - workflow to incorporate input/control samples?
9 years, 8 months ago
United States
A: Voom: estimation of mean-variance relationship with gene expression data normali
9 years, 8 months ago
China/Guangzhou/Southern Medical Univer…
A: making tree from NCBI taxonomy data for ggtree
9 years, 8 months ago
The city by the bay
Combining newer/older RNAseq data, batch correcting
9 years, 8 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 8 months ago
The city by the bay
edgeR - how to convert DGELRT and other classes to .csv files
9 years, 8 months ago
The city by the bay
Differential expression analysis - additive genetic model (how to implement it)
9 years, 8 months ago
The city by the bay
Can featurecounts count number of mapped reads rapidly in arbitrary regions?
9 years, 8 months ago
The city by the bay
Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
9 years, 8 months ago
The city by the bay
RNA-seq analysis using EdgeR- I need to make sure that the codes that I use to analyze the data are correct
9 years, 8 months ago
The city by the bay
design matrix - control for biological replicates
9 years, 8 months ago
The city by the bay
One replicate (one-color OR two-color) is enough to use Limma?
9 years, 8 months ago
The city by the bay
Csaw : filter windows based on matched negative control
9 years, 8 months ago
The city by the bay
duplicateCorrelation and Pearson Correlation
9 years, 8 months ago
The city by the bay
Rsubread featureCounts with strand information
9 years, 8 months ago
The city by the bay
Design and contrast question limma (additive or nested or duplicateCorrelation())??
9 years, 8 months ago
The city by the bay
EdgeR: is more than one control per batch an issue?
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