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following contributors:
9 years, 9 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 9 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 9 months ago
The city by the bay
A: Does limma calculate pvalues using log2 fold changes or with linear values?
9 years, 9 months ago
WEHI, Melbourne, Australia
A: edgeR glmLRT and interaction effect: an example
9 years, 9 months ago
EMBL Heidelberg
Restricting seqlevels to chr1-chr22, chrX, chrY in TxDb from UCSC returns more genes than without restriction
9 years, 9 months ago
EMBL Heidelberg
A: Any method can coerce "list" object to GRanges [reproducible example is included
9 years, 9 months ago
WEHI, Melbourne, Australia
A: Trouble identifying differentially expressed genes on Affymetrix Human Gene 2.0.
9 years, 10 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 10 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 10 months ago
United States
Error aroma.affymetrix [affxparser Fusion SDK exception]
9 years, 10 months ago
United States
How to compare result of fisher.test() with another numeric value in R ?
9 years, 10 months ago
The city by the bay
A: Interpretation of confidence interval values for logFC returned from topTable fu
9 years, 10 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 10 months ago
United States
How to fix ChIPPeakAnno error in adding gene names to annotated peaks?
9 years, 10 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 10 months ago
The city by the bay
edgeR - how to convert DGELRT and other classes to .csv files
9 years, 10 months ago
The city by the bay
A: finding DEG in a dataset with big sample size
9 years, 10 months ago
The city by the bay
A: edgeR - how to convert DGELRT and other classes to .csv files
9 years, 10 months ago
United States
How to compare result of fisher.test() with another numeric value in R ?
9 years, 10 months ago
WEHI, Melbourne, Australia
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
9 years, 10 months ago
WEHI, Melbourne, Australia
A: Correct sequence of functions for edgeR, edgeR robust and edgeR QL.
9 years, 10 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 10 months ago
EMBL European Molecular Biology Laborat…
Deseq2 error estimating size factors -- zeros in count matrix
9 years, 10 months ago
Netherlands
A: Preparing CopywriteR output for GISTIC 2.0 analysis
9 years, 10 months ago
WEHI, Melbourne, Australia
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
9 years, 10 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 11 months ago
Barcelona/Universitat Pompeu Fabra
Best method/package for Gene Set Enrichment Analysis in microarrays?
9 years, 11 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
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