I would like to know the difference between p value and p adjusted value which is given an an output by Deseq2 package

MY second question is what is the cut off of padj which would be ideal to determine deferentially expressed genes

Can anyone please help me with this.

Many Thanks

Tanya Singh

We have a workflow for beginners to DE analysis, with a section relevant to your question:

https://www.bioconductor.org/packages/devel/workflows/vignettes/rnaseqGene/inst/doc/rnaseqGene.html#multiple-testing