News: List of Deprecated Packages Bioc 3.11
gravatar for shepherl
26 days ago by
shepherl ♦♦ 1.7k
United States
shepherl ♦♦ 1.7k wrote:

The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly. The current list of deprecated packages for Bioc 3.11 is as follows:

Maintainer requested deprecation:

  • Software:

    • motifRG
    • triform
  • Annotation:

    • org.At.tair.db
    • hom.At.inp.db
    • hom.Ce.inp.db
    • hom.Dm.inp.db
    • hom.Dr.inp.db
    • hom.Hs.inp.db
    • hom.Mm.inp.db
    • hom.Rn.inp.db
    • hom.Sc.inp.db
    • KEGG.db (use KEGGREST instead)

Unresponsive/not-maintained packages:

  • Software:

    • SELEX
    • CTDquerier

The follow Annotation packages were deprecated in 3.10 and removed from 3.11 but not previously announced.

  • MafDb.ESP6500SI.V2.SSA137.hs37d5
  • MafDb.EXP6500SI.V2.SSA137.GRCh38

We will be sending emails out to packages that have been broken across all platforms for an extended period of time as those are packages that are up for immediate deprecation if not corrected in a timely fashion.

Thank you

ADD COMMENTlink modified 26 days ago • written 26 days ago by shepherl ♦♦ 1.7k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 156 users visited in the last hour