Problems with "read.agiMicroRna"
1
1
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@santicabellos-8550
Last seen 5.9 years ago
United Kingdom

Hello, 

I have one problem with this script:

dd=read.agiMicroRna(targets,
+                     columns=list(TGS="gTotalGeneSignal",
+                                  TPS="gTotalProbeSignal",
+                                  meanS="gMeanSignal",
+                                  procS="gProcessedSignal"),
+                     other.columns=list(IsGeneDetected="gIsGeneDetected",
+                                        IsSaturated="gIsSaturated",
+                                        IsFeatNonUnifOF="gIsFeatNonUnifOL",
+                                        IsFeatPopnOL="gIsFeatPopnOL",
+                                        BGKmd="gBGMedianSignal",
+                                        BGKus="gBGUsed"),
+                     annotation = c( "ControlType", "ProbeName","GeneName"),
+                     verbose=TRUE)

 

R shows me:

Error: could not find function "read.agiMicroRna"

I don't know why R shows this me. I only follow the AgiMicroRna Manual. 

Thank you very much!!

I really appreciated your help!

 

read.agiMicroRna agilent limma microarray mirna • 1.2k views
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1
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Jim Java ▴ 30
@jim-java-8737
Last seen 3.6 years ago
United States

The function read.agiMicroRna is an internal function of package AgiMicroRna, and must be accessed through the "triple colon" operator :::, like so:

## Beware -- use ':::' at your own risk!
AgiMicroRna:::read.agiMicroRna

It appears, though, that the examples in the AgiMicroRna vignette of the read.agiMicroRna and readMicroRnaAFE functions can't be run directly (i.e. by cutting and pasting them into the R console) in the context of the vignette.

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0
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Thank you very much!! 

Finally I solve the problem!

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Can you please post the solution?

Thanks.

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0
Entering edit mode

Thank you very much!! 

Finally I solve the problem!

ADD REPLY
0
Entering edit mode

Thank you very much!! 

Finally I solve the problem!

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