Question: Problems with "read.agiMicroRna"
0
gravatar for santi.cabellos
4.0 years ago by
United Kingdom
santi.cabellos0 wrote:

Hello, 

I have one problem with this script:

dd=read.agiMicroRna(targets,
+                     columns=list(TGS="gTotalGeneSignal",
+                                  TPS="gTotalProbeSignal",
+                                  meanS="gMeanSignal",
+                                  procS="gProcessedSignal"),
+                     other.columns=list(IsGeneDetected="gIsGeneDetected",
+                                        IsSaturated="gIsSaturated",
+                                        IsFeatNonUnifOF="gIsFeatNonUnifOL",
+                                        IsFeatPopnOL="gIsFeatPopnOL",
+                                        BGKmd="gBGMedianSignal",
+                                        BGKus="gBGUsed"),
+                     annotation = c( "ControlType", "ProbeName","GeneName"),
+                     verbose=TRUE)

 

R shows me:

Error: could not find function "read.agiMicroRna"

I don't know why R shows this me. I only follow the AgiMicroRna Manual. 

Thank you very much!!

I really appreciated your help!

 

ADD COMMENTlink modified 4.0 years ago by Jim Java30 • written 4.0 years ago by santi.cabellos0
Answer: Problems with "read.agiMicroRna"
1
gravatar for Jim Java
4.0 years ago by
Jim Java30
United States
Jim Java30 wrote:

The function read.agiMicroRna is an internal function of package AgiMicroRna, and must be accessed through the "triple colon" operator :::, like so:

## Beware -- use ':::' at your own risk!
AgiMicroRna:::read.agiMicroRna

It appears, though, that the examples in the AgiMicroRna vignette of the read.agiMicroRna and readMicroRnaAFE functions can't be run directly (i.e. by cutting and pasting them into the R console) in the context of the vignette.

ADD COMMENTlink written 4.0 years ago by Jim Java30

Thank you very much!! 

Finally I solve the problem!

ADD REPLYlink written 4.0 years ago by santi.cabellos0

Thank you very much!! 

Finally I solve the problem!

ADD REPLYlink written 4.0 years ago by santi.cabellos0

Thank you very much!! 

Finally I solve the problem!

ADD REPLYlink written 4.0 years ago by santi.cabellos0
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