Problems with "read.agiMicroRna"
1
1
Entering edit mode
@santicabellos-8550
Last seen 8.4 years ago
United Kingdom

Hello, 

I have one problem with this script:

dd=read.agiMicroRna(targets,
+                     columns=list(TGS="gTotalGeneSignal",
+                                  TPS="gTotalProbeSignal",
+                                  meanS="gMeanSignal",
+                                  procS="gProcessedSignal"),
+                     other.columns=list(IsGeneDetected="gIsGeneDetected",
+                                        IsSaturated="gIsSaturated",
+                                        IsFeatNonUnifOF="gIsFeatNonUnifOL",
+                                        IsFeatPopnOL="gIsFeatPopnOL",
+                                        BGKmd="gBGMedianSignal",
+                                        BGKus="gBGUsed"),
+                     annotation = c( "ControlType", "ProbeName","GeneName"),
+                     verbose=TRUE)

 

R shows me:

Error: could not find function "read.agiMicroRna"

I don't know why R shows this me. I only follow the AgiMicroRna Manual. 

Thank you very much!!

I really appreciated your help!

 

read.agiMicroRna agilent limma microarray mirna • 1.9k views
ADD COMMENT
1
Entering edit mode
Jim Java ▴ 30
@jim-java-8737
Last seen 6.1 years ago
United States

The function read.agiMicroRna is an internal function of package AgiMicroRna, and must be accessed through the "triple colon" operator :::, like so:

## Beware -- use ':::' at your own risk!
AgiMicroRna:::read.agiMicroRna

It appears, though, that the examples in the AgiMicroRna vignette of the read.agiMicroRna and readMicroRnaAFE functions can't be run directly (i.e. by cutting and pasting them into the R console) in the context of the vignette.

ADD COMMENT
0
Entering edit mode

Thank you very much!! 

Finally I solve the problem!

ADD REPLY
0
Entering edit mode

Can you please post the solution?

Thanks.

ADD REPLY
0
Entering edit mode

Thank you very much!! 

Finally I solve the problem!

ADD REPLY
0
Entering edit mode

Thank you very much!! 

Finally I solve the problem!

ADD REPLY

Login before adding your answer.

Traffic: 708 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6