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mirna
•
reset
0
votes
1
reply
90
views
mircomb analysis from deg's list
mircomb
mrna
mirna
degs
interaction
9 months ago
andreia
• 0
4
votes
4
replies
1.0k
views
Affymetrix miRNA4.1 / oligo package / pd.mirna.4.1
microarray
mirna
oligo package
pdinfobuilder
pd.mirna
updated 17 months ago by
soumyab.g
• 0 • written 3.9 years ago by
rolan.zauner
▴ 10
0
votes
2
replies
235
views
Very high threshold for independent filtering
deseq2
mirna
independent filtering
updated 2.1 years ago by
Michael Love
32k • written 2.1 years ago by
thomas.deimel
• 0
0
votes
5
replies
358
views
Hill shape p-value histogram after differential miRNA expression analysis with DESeq2
deseq2
mirna
fdrtool
updated 2.2 years ago by
Robert Castelo
★ 2.7k • written 2.2 years ago by
L_K
• 0
1
vote
8
replies
868
views
Trying to map nucleotide position from a transcript to genomic location
genomicfeatures
mapfromtranscripts
mirna
updated 2.6 years ago by
Valerie Obenchain
★ 6.7k • written 2.6 years ago by
Victoria Perreau
▴ 20
1
vote
2
replies
370
views
Whether "read_counts_miRNA" or "reads_per_million_miRNA" to use for DE expression analysis using DeSeq2
tcgadownload
deseq2
mirna
normalization
updated 2.8 years ago by
Lorena Pantano
▴ 110 • written 2.8 years ago by
Björn
• 0
0
votes
0
replies
438
views
miR2Pathway Finite Observations
pathway analysis
mirna
parallel
3.1 years ago
genomic8328
▴ 10
2
votes
0
replies
447
views
Job:
PhD Studentship - Investigating Regulation of Transcription and Translation in Prostate Cancer
mirna
riboseq
smallrna
differential gene expression
Job
3.1 years ago
Andy Lynch
▴ 100
0
votes
1
reply
467
views
Best way to analyze multiple treatments using DESeq2?
deseq2
rna-seq
mirna
updated 3.1 years ago by
Michael Love
32k • written 3.1 years ago by
michael.frech
• 0
0
votes
0
replies
487
views
Custom graphNEL object for pathview
pathview
mirintegrator
miRNA
3.5 years ago
lech.kaczmarczyk
▴ 10
4
votes
3
replies
1.8k
views
EdgeR on miRNA data
edger
miRNA
updated 4.0 years ago by
Aaron Lun
★ 26k • written 4.0 years ago by
melmogy
• 0
0
votes
4
replies
2.6k
views
miRNA-seq data analysis
miRNA
mirna-seq
updated 4.1 years ago by
Jon Bråte
▴ 180 • written 4.1 years ago by
just
• 0
0
votes
0
replies
936
views
miRNA target prediction tool(package) using R
mirna
prediction
target
4.1 years ago
Adam
• 0
1
vote
1
reply
545
views
miRNA normalization for large amount of samples using LVSmiRNA
mirna
normalization
4.5 years ago • updated 4.3 years ago
carleshf
▴ 10
2
votes
5
replies
673
views
miRNA Probe IDs
mirna
microarray
mirbase.db
updated 4.5 years ago by
Dario Strbenac
★ 1.5k • written 4.5 years ago by
snufkin002
• 0
1
vote
2
replies
887
views
Rsubread align for miRNAseq?
rsubread
miRNA
updated 4.5 years ago by
Wei Shi
★ 3.3k • written 4.5 years ago by
Ina Hoeschele
▴ 610
0
votes
2
replies
499
views
Differential expression of one group agains all samples
deseq2
mirna
differential gene expression
updated 4.5 years ago by
Gavin Kelly
▴ 580 • written 4.5 years ago by
ofonov
▴ 10
0
votes
2
replies
1.0k
views
TPM for miRNA tags
mirna
4.6 years ago • updated 4.5 years ago
manoharankumar01
• 0
0
votes
0
replies
459
views
Normalizing miRNA-1_0 and miRNA-1_0_2Xgain type arrays simultaneously
mirna
microarray
normalization
4.6 years ago
arisarkar88
• 0
3
votes
5
replies
2.6k
views
Affymetrix miRNA 4.0 Normalization and Analysis
R
Limma
microarray
miRNA
updated 5.2 years ago by
James W. MacDonald
56k • written 5.2 years ago by
Radek
▴ 80
4
votes
6
replies
1.5k
views
limma: within-array duplicates correlation
limma
mirna
microarray
updated 5.2 years ago by
Aaron Lun
★ 26k • written 5.2 years ago by
roser.navarro
• 0
0
votes
0
replies
803
views
get precursor mirna from mature mirna
bioconductor
mirna
mir
mirbase.db
5.3 years ago
C T
▴ 140
3
votes
4
replies
882
views
Network generation from adjacency matrix of zeroes and ones
R
adjacency matrix
mirna
5.4 years ago
alptaciroglu
▴ 50
0
votes
0
replies
895
views
miRNA 3D-Gene chips Toray
Toray 3D-Gene
miRNA
limma
5.5 years ago
santi.cabellos
▴ 10
0
votes
0
replies
563
views
targetScan R errors
targetscan
R
error handling
miRNA
5.5 years ago
alptaciroglu
▴ 50
1
vote
5
replies
744
views
normalization of a miRNA microarray
normalization
vsn
eximir
microarray
miRNA
updated 5.6 years ago by
Wolfgang Huber
13k • written 5.6 years ago by
alptaciroglu
▴ 50
1
vote
1
reply
712
views
How can get the GO and KEGG miRNA microarray Agilent?
go
kegg
limma
microarray
mirna
5.6 years ago
santi.cabellos
▴ 10
2
votes
5
replies
1.0k
views
Problems with "read.agiMicroRna"
read.agiMicroRna
agilent
limma
microarray
mirna
updated 5.6 years ago by
Jim Java
▴ 30 • written 5.6 years ago by
santi.cabellos
▴ 10
4
votes
2
replies
1.4k
views
Detect global differences in miRNA expression between tumor and normal using spike-ins
edger
limma
mirna
sequencing
updated 5.8 years ago by
Aaron Lun
★ 26k • written 5.8 years ago by
R
▴ 40
1
vote
5
replies
1.8k
views
miRNA expression analysis : annotation
miRNA
annotation
affymetrixchip
6.0 years ago
aswathym
• 0
0
votes
0
replies
521
views
Invitation Research Collaborations
cancer
microarray
mirna
sequencing
6.0 years ago
alexandru.floares
• 0
0
votes
0
replies
1.2k
views
News:
RNAseq data analysis courses: Torino (Italy) : Beginner course March 17-19 2015 & Advance Course April 14-16 2015
rnaseq
mirna
onechannelgui
chimera
News
6.3 years ago
raffaele calogero
▴ 500
6
votes
2
replies
1.2k
views
Should I skip the eBayes step when using Limma for Affymetrix miRNA v1 chip?
miRNA
cdf
probe
limma
miRNA
cdf
probe
limma
updated 6.6 years ago by
Gordon Smyth
42k • written 6.7 years ago by
Guest User
★ 12k
3
votes
1
reply
811
views
Bioinformatics researching Schizophrenia
miRNA
updated 6.6 years ago by
Valerie Obenchain
★ 6.7k • written 6.6 years ago by
Guest User
★ 12k
0
votes
5
replies
1.1k
views
Using custom CDF with 'make.cdf.env'
miRNA
cdf
probe
miRNA
cdf
probe
updated 6.6 years ago by
Scott Robinson
▴ 130 • written 6.6 years ago by
Guest User
★ 12k
0
votes
0
replies
2.7k
views
cpm cutoff (edgeR) [was: total count filter cutoff (edgeR)]
Sequencing
miRNA
edgeR
Sequencing
miRNA
edgeR
6.8 years ago
Gordon Smyth
42k
0
votes
0
replies
643
views
total count filter cutoff (edgeR)
miRNA
edgeR
miRNA
edgeR
6.8 years ago
Daniel
▴ 10
0
votes
0
replies
684
views
QuasR for miRNA
miRNA
QuasR
miRNA
QuasR
6.9 years ago
Michael Stadler
▴ 340
0
votes
4
replies
737
views
combat error message
miRNA
Normalization
affy
miRNA
Normalization
affy
updated 6.9 years ago by
Guest User
★ 12k • written 6.9 years ago by
W. Evan Johnson
▴ 840
0
votes
0
replies
550
views
ComBat error message, thanks
miRNA
Normalization
affy
miRNA
Normalization
affy
7.0 years ago
Guan
▴ 20
0
votes
2
replies
774
views
About ChIPpeakAnno
miRNA
ChIPpeakAnno
miRNA
ChIPpeakAnno
updated 7.0 years ago by
Julie Zhu
★ 4.3k • written 7.0 years ago by
Lucia Peixoto
▴ 330
0
votes
0
replies
628
views
miRNA to gene mapping (miRNApath)
miRNA
miRNApath
miRNA
miRNApath
7.0 years ago
Kishor Tappita
▴ 340
0
votes
0
replies
2.9k
views
Bioconductor 2.14 is released
BiocViews
aCGH
SNP
Sequencing
RNASeq
ChIPSeq
miRNA
Microarray
qPCR
Metabolomics
Coverage
7.0 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
861
views
EdgeR repeated measurment
miRNA
Normalization
edgeR
miRNA
Normalization
edgeR
updated 7.0 years ago by
Gordon Smyth
42k • written 7.0 years ago by
Guest User
★ 12k
0
votes
0
replies
703
views
About ChIPpeakAnno output = "shortestDistance"
miRNA
ChIPpeakAnno
miRNA
ChIPpeakAnno
7.0 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
698
views
About ChIPpeakAnno
miRNA
ChIPpeakAnno
miRNA
ChIPpeakAnno
updated 7.1 years ago by
Julie Zhu
★ 4.3k • written 7.1 years ago by
Lucia Peixoto
▴ 330
0
votes
4
replies
702
views
AgiMicroRna -1 filtered values
miRNA
GO
miRNA
GO
7.2 years ago
Coonen Maarten TGX
▴ 30
0
votes
0
replies
1.0k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA
Annotation
cdf
makecdfenv
miRNA
Annotation
cdf
makecdfenv
7.2 years ago
Isaac Neuhaus
▴ 360
0
votes
3
replies
1.0k
views
how to extract probes for a probeset from PdInfo database?
miRNA
cdf
affy
miRNA
cdf
affy
updated 7.2 years ago by
Benilton Carvalho
★ 4.3k • written 7.2 years ago by
Guido Hooiveld
★ 2.9k
0
votes
0
replies
892
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA
cdf
affy
makecdfenv
affxparser
miRNA
cdf
affy
makecdfenv
affxparser
7.2 years ago
James W. MacDonald
56k
241 results • Page
1 of 5
Recent ...
Replies
Answer: DepMap copy number
by
Laurent Gatto
1.5k
Hi Danny - sorry for the delay in answering, I hadn't set `depmap` as a tag yet. Yes, that bug has been fixed in the devel version.
Answer: High fold change reported for comparison of samples with zero values in all samp
by
James W. MacDonald
56k
The universal recommendation is to remove all genes with consistently low (or all zero) expression values prior to doing any modeling. It i…
Comment: Sample quality weights for RNA-seq
by
Naomi Altman
★ 6.0k
Thanks Michael. I'll try that. (Limma folks, I'd still love to hear from you.)
Answer: Installation error if message implemented in .Rprofile
by
Mike Smith
★ 4.9k
A similar issue has been reported recently for rhdf5filters (https://github.com/grimbough/rhdf5filters/issues/11) and rhdf5 (https://github…
Comment: Couldn't load org.Hs.eg.db
by
Xulei Huo
• 0
That does not work, i have tried it.
Votes
Answer: TargetsFile. Where it is?
Answer: TargetsFile. Where it is?
Comment: TargetsFile. Where it is?
Comment: Using DESeq2 to identify changing transcriptional activity in a metagenome
Answer: .onLoad failed in loadNamespace() for 'org.Hs.eg.db'
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