Not able to install any Bioconductor 3.18 package [unable to access index]
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@lorena-pantano-6001
Last seen 29 days ago
Boston

I was trying to install some Bioconductor packages today but I am facing this error:

> BiocManager::install("BiocNeighbors")
'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package =
"BiocManager")' for details.
Replacement repositories:
    CRAN: https://cran.rstudio.com/
Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.18/bioc/src/contrib/PACKAGES'

It seems the URL needed to install packages are not longer available? I tried in two different computers, laptop (M2 chip) and cluster (linux centos7). It doesn't matter the package, I tried a few. Anybody is facing the same issue?

Thanks

Install • 692 views
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I am experiencing the same problem, I tried with all the advices I found in similar posts but nothing seems to work

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Try the mirror suggestion for now: can't open mghp.osn.xsede.org

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It works with "Germany (Gottingen)"! Thanks!

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I solved the problem installing the latest R version (4.4.0)

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shepherl 3.9k
@lshep
Last seen 21 hours ago
United States

An outage was reported at the location we store the Bioconductor archives. We are in process of temporarily activating a different backup location to resolve the issue. We are sorry for any inconvenience this has caused. Access should be restored

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Thanks! I can confirm it is working now - had been broken since sometime yesterday.

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