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2
votes
1
answer
166
views
1
answer
summarize scores of GRanges into bins
genomicranges grangeslist findoverlaps bin written 15 days ago by Assa Yeroslaviz • 1.3k • updated 15 days ago by Michael Lawrence ♦ 9.6k
2
votes
1
answer
72
views
1
answer
subsetByOverlaps with Multimapping
genomicranges granges findoverlaps subsetbyoverlaps written 18 days ago by Assa Yeroslaviz • 1.3k
0
votes
0
answers
128
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0
answers
behaviour of findOverlaps on GRangesList object
genomicranges grangeslist findoverlaps written 3 months ago by lovro0 • 10
1
vote
1
answer
105
views
1
answer
Obtain exactly the interval that overlap
granges findoverlaps written 4 months ago by julrodr80 • 20 • updated 4 months ago by Michael Lawrence ♦ 9.6k
2
votes
2
answers
173
views
2
answers
Findoverlaps insame sample
genomicranges granges findoverlaps written 4 months ago by julrodr80 • 20
0
votes
1
answer
141
views
1
answer
findOverlaps - how to get adjacent ranges?
iranges findoverlaps written 5 months ago by tobias.kockmann • 20 • updated 5 months ago by Michael Lawrence ♦ 9.6k
0
votes
1
answer
208
views
1
answer
findOverlaps() error after updating package
genomicranges findoverlaps written 7 months ago by sellis18 • 20 • updated 7 months ago by Martin Morgan ♦♦ 20k
1
vote
1
answer
168
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1
answer
pROBLEMS WITH findOverlapPairs
iranges granges findoverlaps written 7 months ago by julrodr80 • 20 • updated 7 months ago by James W. MacDonald ♦ 44k
2
votes
2
answers
240
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2
answers
how to make findOverlaps from genomicAlignments package to consider soft-clipped parts of BWA paired reads in overlap calculation?
genomicalignments findoverlaps clipped read written 9 months ago by lovro0 • 10
1
vote
1
answer
724
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1
answer
How can I integrate set of compressedList in multiple list into one without duplication?
iranges R findoverlaps list integerlist written 13 months ago by jian_liangli • 0
5
votes
1
answer
387
views
1
answer
seeking idea for proper output representation for multiple GRanges overlapping
biocparallel grangeslist R findoverlaps written 14 months ago by Jurat Shahidin • 60
3
votes
1
answer
244
views
1
answer
Find hits of subject that start somewhere in the query by using GRanges / IRanges and findOverlap()
iranges granges R findoverlaps written 13 months ago by svenbioinf • 0 • updated 13 months ago by Michael Lawrence ♦ 9.6k
3
votes
1
answer
282
views
1
answer
Extract coordinates of overlapping genomic intervals
genomicranges findoverlaps intersect written 13 months ago by rubi • 70 • updated 13 months ago by Steve Lianoglou ♦ 12k
2
votes
1
answer
231
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1
answer
GRanges get hits from (only) antisense strand with findOverlaps().
granges antisense findoverlaps written 13 months ago by svenbioinf • 0 • updated 13 months ago by li lilingdu • 450
3
votes
1
answer
368
views
1
answer
find next non-overlapping nth elements of a given region
biomart granges findoverlaps written 15 months ago by alessandro.pastore • 10 • updated 15 months ago by Michael Lawrence ♦ 9.6k
28
votes
4
answers
1.3k
views
10 follow
4
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Find overlap for more than 2 GRanges object simultaneously (reproducible example is updated) ?
granges findoverlaps written 19 months ago by Jurat Shahidin • 60 • updated 17 months ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
337
views
1
answer
Is that an efficient way to find the overlapped , upstream and downstream genes for a bunch of genes
genomicranges findoverlaps geneoverlap written 17 months ago by yao.h.1988 • 0 • updated 17 months ago by Michael Lawrence ♦ 9.6k
6
votes
1
answer
453
views
1
answer
How to implement element-wise-overlaps with iteration for two different bed files in R?
R findoverlaps iterators written 20 months ago by Jurat Shahidin • 60 • updated 20 months ago by Hervé Pagès ♦♦ 12k
0
votes
1
answer
433
views
1
answer
IRanges: reduce(), findOverlaps(), and intersect() by group
iranges findoverlaps intersect group written 21 months ago by pesquivel • 0
0
votes
1
answer
362
views
1
answer
I want have a score vector of length of grange that is overlapping with other grange.
granges findoverlaps subsetbyoverlaps written 22 months ago by vinod.acear • 20 • updated 22 months ago by Michael Lawrence ♦ 9.6k
0
votes
0
answers
297
views
0
answers
Different amount of overlapping Peaks in ChIPpeakAnno-Package
chippeakanno venn diagram findoverlaps written 22 months ago by N. F. • 0
7
votes
1
answer
514
views
1
answer
how to extract Granges not overlapping with other ganges?
granges findoverlaps written 23 months ago by vinod.acear • 20 • updated 23 months ago by James W. MacDonald ♦ 44k
3
votes
1
answer
385
views
1
answer
how much positions overlapped for each pair of the pairs obtained by findoverlap.
genomicranges granges findoverlaps subsetbyoverlaps written 23 months ago by vinod.acear • 20 • updated 23 months ago by Hervé Pagès ♦♦ 12k
2
votes
2
answers
429
views
2
answers
Intersecting a Granges and a GRangesList using within
granges grangeslist findoverlaps written 2.0 years ago by d r • 150 • updated 2.0 years ago by Hervé Pagès ♦♦ 12k
2
votes
2
answers
533
views
2
answers
Intersecting a Granges and a GRangesList elementwise
genomicranges findoverlaps written 2.1 years ago by d r • 150 • updated 2.1 years ago by Hervé Pagès ♦♦ 12k
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