Search
0
votes
0
answers
74
views
0
answers
R_Granges_adding merged Metadata columns
granges findoverlaps written 4 months ago by me.saichi • 0
1
vote
1
answer
272
views
1
answer
GenomicRanges: identify overlapping regions, get intersection between each overlapping pair and add gene coordinates (start, end, strand and ids)
genomicranges overlap findoverlaps intersect written 6 months ago by Caroline Grisbach Meissner • 0
2
votes
1
answer
392
views
1
answer
summarize scores of GRanges into bins
genomicranges grangeslist findoverlaps bin written 11 months ago by Assa Yeroslaviz • 1.4k • updated 11 months ago by Michael Lawrence ♦ 10k
2
votes
1
answer
275
views
1
answer
subsetByOverlaps with Multimapping
genomicranges granges findoverlaps subsetbyoverlaps written 11 months ago by Assa Yeroslaviz • 1.4k
0
votes
0
answers
342
views
0
answers
behaviour of findOverlaps on GRangesList object
genomicranges grangeslist findoverlaps written 13 months ago by lovro0 • 10
1
vote
1
answer
198
views
1
answer
Obtain exactly the interval that overlap
granges findoverlaps written 15 months ago by julrodr80 • 30 • updated 15 months ago by Michael Lawrence ♦ 10k
2
votes
2
answers
305
views
2
answers
Findoverlaps insame sample
genomicranges granges findoverlaps written 15 months ago by julrodr80 • 30
0
votes
1
answer
291
views
1
answer
findOverlaps - how to get adjacent ranges?
iranges findoverlaps written 16 months ago by tobias.kockmann • 20 • updated 16 months ago by Michael Lawrence ♦ 10k
0
votes
1
answer
403
views
1
answer
findOverlaps() error after updating package
genomicranges findoverlaps written 18 months ago by sellis18 • 20 • updated 18 months ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
348
views
1
answer
pROBLEMS WITH findOverlapPairs
iranges granges findoverlaps written 18 months ago by julrodr80 • 30 • updated 18 months ago by James W. MacDonald ♦ 47k
2
votes
2
answers
491
views
2
answers
how to make findOverlaps from genomicAlignments package to consider soft-clipped parts of BWA paired reads in overlap calculation?
genomicalignments findoverlaps clipped read written 20 months ago by lovro0 • 10
1
vote
1
answer
853
views
1
answer
How can I integrate set of compressedList in multiple list into one without duplication?
iranges R findoverlaps list integerlist written 2.0 years ago by jian_liangli • 0
5
votes
1
answer
487
views
1
answer
seeking idea for proper output representation for multiple GRanges overlapping
biocparallel grangeslist R findoverlaps written 2.1 years ago by Jurat Shahidin • 60
3
votes
1
answer
343
views
1
answer
Find hits of subject that start somewhere in the query by using GRanges / IRanges and findOverlap()
iranges granges R findoverlaps written 2.0 years ago by svenbioinf • 0 • updated 2.0 years ago by Michael Lawrence ♦ 10k
3
votes
1
answer
459
views
1
answer
Extract coordinates of overlapping genomic intervals
genomicranges findoverlaps intersect written 2.0 years ago by rubi • 90 • updated 2.0 years ago by Steve Lianoglou ♦ 12k
2
votes
1
answer
331
views
1
answer
GRanges get hits from (only) antisense strand with findOverlaps().
granges antisense findoverlaps written 2.0 years ago by svenbioinf • 0 • updated 2.0 years ago by li lilingdu • 450
3
votes
1
answer
471
views
1
answer
find next non-overlapping nth elements of a given region
biomart granges findoverlaps written 2.2 years ago by alessandro.pastore • 20 • updated 2.2 years ago by Michael Lawrence ♦ 10k
28
votes
4
answers
2.2k
views
10 follow
4
answers
Find overlap for more than 2 GRanges object simultaneously (reproducible example is updated) ?
granges findoverlaps written 2.5 years ago by Jurat Shahidin • 60 • updated 2.3 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
509
views
1
answer
Is that an efficient way to find the overlapped , upstream and downstream genes for a bunch of genes
genomicranges findoverlaps geneoverlap written 2.4 years ago by yao.h.1988 • 0 • updated 2.4 years ago by Michael Lawrence ♦ 10k
6
votes
1
answer
604
views
1
answer
How to implement element-wise-overlaps with iteration for two different bed files in R?
R findoverlaps iterators written 2.6 years ago by Jurat Shahidin • 60 • updated 2.6 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
765
views
1
answer
IRanges: reduce(), findOverlaps(), and intersect() by group
iranges findoverlaps intersect group written 2.7 years ago by pesquivel • 0
0
votes
1
answer
547
views
1
answer
I want have a score vector of length of grange that is overlapping with other grange.
granges findoverlaps subsetbyoverlaps written 2.8 years ago by vinod.acear • 20 • updated 2.8 years ago by Michael Lawrence ♦ 10k
0
votes
0
answers
383
views
0
answers
Different amount of overlapping Peaks in ChIPpeakAnno-Package
chippeakanno venn diagram findoverlaps written 2.8 years ago by N. F. • 0
7
votes
1
answer
893
views
1
answer
how to extract Granges not overlapping with other ganges?
granges findoverlaps written 2.8 years ago by vinod.acear • 20 • updated 2.8 years ago by James W. MacDonald ♦ 47k
3
votes
1
answer
555
views
1
answer
how much positions overlapped for each pair of the pairs obtained by findoverlap.
genomicranges granges findoverlaps subsetbyoverlaps written 2.8 years ago by vinod.acear • 20 • updated 2.8 years ago by Hervé Pagès ♦♦ 13k
<prev • 31 results • page 1 of 2 • next >
Recent...
Replies
Votes
Awards • All »
Locations • All »
  • China/Beijing, 1 minute ago
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 312 users visited in the last hour