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61
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R_Granges_adding merged Metadata columns
granges findoverlaps written 11 weeks ago by me.saichi • 0
1
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1
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229
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1
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GenomicRanges: identify overlapping regions, get intersection between each overlapping pair and add gene coordinates (start, end, strand and ids)
genomicranges overlap findoverlaps intersect written 5 months ago by Caroline Grisbach Meissner • 0
2
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1
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338
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1
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summarize scores of GRanges into bins
genomicranges grangeslist findoverlaps bin written 9 months ago by Assa Yeroslaviz • 1.4k • updated 9 months ago by Michael Lawrence ♦ 10.0k
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240
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subsetByOverlaps with Multimapping
genomicranges granges findoverlaps subsetbyoverlaps written 9 months ago by Assa Yeroslaviz • 1.4k
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behaviour of findOverlaps on GRangesList object
genomicranges grangeslist findoverlaps written 12 months ago by lovro0 • 10
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1
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186
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1
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Obtain exactly the interval that overlap
granges findoverlaps written 13 months ago by julrodr80 • 20 • updated 13 months ago by Michael Lawrence ♦ 10.0k
2
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2
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284
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2
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Findoverlaps insame sample
genomicranges granges findoverlaps written 13 months ago by julrodr80 • 20
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1
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257
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1
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findOverlaps - how to get adjacent ranges?
iranges findoverlaps written 14 months ago by tobias.kockmann • 20 • updated 14 months ago by Michael Lawrence ♦ 10.0k
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379
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findOverlaps() error after updating package
genomicranges findoverlaps written 16 months ago by sellis18 • 20 • updated 16 months ago by Martin Morgan ♦♦ 21k
1
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321
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pROBLEMS WITH findOverlapPairs
iranges granges findoverlaps written 16 months ago by julrodr80 • 20 • updated 16 months ago by James W. MacDonald ♦ 46k
2
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2
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413
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2
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how to make findOverlaps from genomicAlignments package to consider soft-clipped parts of BWA paired reads in overlap calculation?
genomicalignments findoverlaps clipped read written 18 months ago by lovro0 • 10
1
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1
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843
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1
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How can I integrate set of compressedList in multiple list into one without duplication?
iranges R findoverlaps list integerlist written 22 months ago by jian_liangli • 0
5
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1
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478
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1
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seeking idea for proper output representation for multiple GRanges overlapping
biocparallel grangeslist R findoverlaps written 23 months ago by Jurat Shahidin • 60
3
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1
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332
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Find hits of subject that start somewhere in the query by using GRanges / IRanges and findOverlap()
iranges granges R findoverlaps written 22 months ago by svenbioinf • 0 • updated 22 months ago by Michael Lawrence ♦ 10.0k
3
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426
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1
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Extract coordinates of overlapping genomic intervals
genomicranges findoverlaps intersect written 22 months ago by rubi • 90 • updated 22 months ago by Steve Lianoglou ♦ 12k
2
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1
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323
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1
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GRanges get hits from (only) antisense strand with findOverlaps().
granges antisense findoverlaps written 22 months ago by svenbioinf • 0 • updated 22 months ago by li lilingdu • 450
3
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1
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457
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1
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find next non-overlapping nth elements of a given region
biomart granges findoverlaps written 2.0 years ago by alessandro.pastore • 20 • updated 2.0 years ago by Michael Lawrence ♦ 10.0k
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10 follow
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Find overlap for more than 2 GRanges object simultaneously (reproducible example is updated) ?
granges findoverlaps written 2.3 years ago by Jurat Shahidin • 60 • updated 2.2 years ago by Martin Morgan ♦♦ 21k
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473
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1
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Is that an efficient way to find the overlapped , upstream and downstream genes for a bunch of genes
genomicranges findoverlaps geneoverlap written 2.2 years ago by yao.h.1988 • 0 • updated 2.2 years ago by Michael Lawrence ♦ 10.0k
6
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1
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579
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1
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How to implement element-wise-overlaps with iteration for two different bed files in R?
R findoverlaps iterators written 2.4 years ago by Jurat Shahidin • 60 • updated 2.4 years ago by Hervé Pagès ♦♦ 13k
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691
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1
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IRanges: reduce(), findOverlaps(), and intersect() by group
iranges findoverlaps intersect group written 2.5 years ago by pesquivel • 0
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1
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514
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1
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I want have a score vector of length of grange that is overlapping with other grange.
granges findoverlaps subsetbyoverlaps written 2.6 years ago by vinod.acear • 20 • updated 2.6 years ago by Michael Lawrence ♦ 10.0k
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378
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Different amount of overlapping Peaks in ChIPpeakAnno-Package
chippeakanno venn diagram findoverlaps written 2.6 years ago by N. F. • 0
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1
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824
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1
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how to extract Granges not overlapping with other ganges?
granges findoverlaps written 2.6 years ago by vinod.acear • 20 • updated 2.6 years ago by James W. MacDonald ♦ 46k
3
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1
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530
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1
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how much positions overlapped for each pair of the pairs obtained by findoverlap.
genomicranges granges findoverlaps subsetbyoverlaps written 2.6 years ago by vinod.acear • 20 • updated 2.6 years ago by Hervé Pagès ♦♦ 13k
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