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Answer: error for the geneGOEnricher function of the NoRCE package
by
James W. MacDonald
66k
This will likely require the maintainer of that package to fix. Note the error you get (or at least the English version of): ``` Error …
Answer: Understanding Contrasts and Interaction in DESeq2 for 2 genotypes, 2 treatments
by
swbarnes2
★ 1.4k
Your questions are going to be answered in a much more readable manner if you make a new column in ColData of Genotype_Treatment. Make you…
Answer: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Mike Smith
★ 6.5k
You're running a pretty old version of R and Bioconductor (it's from October 2020). Unfortunately the uswest mirror of Ensembl has been re…
Comment: Size factor normalized counts for between sample comparisons - correct?
by
boczniak767
▴ 740
Thank you @mikelove and @atpoint for help :-)
Comment: More significant genes after lfcShrink in DEseq2?
by
m.orlov
• 0
Hello and thank you for taking the time to answer my question! That's a good point, re threshold vs shrinkage. I know under regular conditi…
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A: Using spike-in RNA for normalization of Salmon counts imported using Tximport
A: Using spike-in RNA for normalization of Salmon counts imported using Tximport
Answer: Using edgeR and a spike-in to calculate absolute abundance
Answer: Using edgeR and a spike-in to calculate absolute abundance
Comment: stat value is throwed out after lfcShrink in DESeq2
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