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Comment: Research Project - Expanding search funtionality on the GEO database
by
Sean Davis
21k
@67c68aa8 , I think it might be challenging to walk through your project in detail on this support forum. If you and your advisor would lik…
Comment: Research Project - Expanding search funtionality on the GEO database
by
Sean Davis
21k
Totally agree with your comments, @atpoint . One small detail--GEOquery can handle any data in GEO, including RNA-seq data. There has been …
Comment: ChAMP input: Beta Matrix?
by
tahirah.yasmin2014
• 0
Hi! I am coming back to this post after a long time it seems. I also have an excel sheet with all the beta values and probe IDs. You are s…
Comment: Research Project - Expanding search funtionality on the GEO database
by
James W. MacDonald
66k
What do you mean by 'annotate'? Identify the array type, or map probeset IDs to the gene that is meant to be measured? Something else?
Comment: Difference between enrichGO results and Enrichr website results
by
Guido Hooiveld
★ 4.0k
I think it is impossible to answer your question.... The code of `enrichGO` is 'open', so you could check the details of each step of the a…
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Answer: DESeq2 time course using fitted splines
Answer: DESeq2 time course using fitted splines
Comment: Difference between enrichGO results and Enrichr website results
Answer: Struggling to convert a large list of non-model genes into human orthologs, any
A: makeContrasts from limma overides "i" as a varible
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