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Comment: Annotation for EPICv2
by
nurkenber
• 0
Got it Thank you
Comment: Annotation for EPICv2
by
James W. MacDonald
67k
I don't think I can help with your questions. Like I said, the annotation data are based on the manifest files that Illumina provides, and …
Comment: Annotation for EPICv2
by
nurkenber
• 0
Thank you for your reply. I welcome any help I can get) I checked the first two are based on the same file, [Infinium MethylationEPIC v2.…
Answer: Mostly increased counts in differentially accessible peaks using DESeq2
by
Michael Love
42k
The difference between tracks and DESeq2 (or any count method in Bioc) is that tracks use simple scaling that is not robust to large shifts…
Answer: How to set filtering standard for low-expression genes in ImpulseDE2
by
Michael Love
42k
I think ImpulseDE2 is no longer part of Bioconductor (the package landing page doesn't exist). Maybe try here: https://github.com/YosefL…
Votes
Comment: Annotation for EPICv2
Answer: Highly DE genes but small count difference within conditions
Answer: Highly DE genes but small count difference within conditions
Answer: Annotation for EPICv2
C: Vertical line at A=0, nothing else, on MA plot
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