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Answer: Interpreting DESEQ2 interaction term and inclusion of covariate
by
swbarnes2
★ 1.4k
"ecotypehigh.rearing_high" will basically do a 4 group comparison, and tell you if any genes that change going from high to low change diff…
Comment: error in ChAMP loading file
by
Ashley
• 0
This error in ChAMP loading file and the solutions provided here are good and there are people who need these solutions. To get the [Rockin…
Answer: cameraPR() non directional test
by
Hugo Varet
▴ 80
Dear Gordon, thank you for your answer, that's exactly what I wanted to know. Happy to see you'll make it available in the next version o…
Answer: DEseq2 design for additive treatment
by
ATpoint
★ 4.7k
See https://support.bioconductor.org/p/69104/#69197, https://support.bioconductor.org/p/129755/ for testing against an average. Many other …
Comment: Use of limma R package with targeted proteomics for DE analysis
by
svlachavas
▴ 840
Dear Gordon, thanks a million for your reply (just saw it, did not get any notification through email) !! Regarding the log2 transformation…
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Answer: DEseq2 design for additive treatment
Answer: limma::voom vs edgeR::voomLmFit - when to use?
Answer: limma::voom vs edgeR::voomLmFit - when to use?
Comment: limma::voom vs edgeR::voomLmFit - when to use?
Comment: limma::voom vs edgeR::voomLmFit - when to use?
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