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Comment: DESeq2 sizefactors counfounded with biological treatment by Anna • 0
Hi James, Apologies (re: posting in the wrong place). Thank you so much for your response, that was exactly the help I needed. Best, A…
Comment: ANOVA like approach of edgeR by Talip ▴ 10
I am comparing the expression patterns of different tissue cell lines (CellType) under five distinct media conditions (Status). Since the c…
Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 160
It is almost always better to retain the full observed data, if the statistical software is able to model the repeated measures. This is a…
Comment: makeContrastsDream for Interaction by gabriel.hoffman ▴ 160
The simplest way to handle contrasts with an interaction term is to create a new variable. Lets consider a simpler case with variables `Se…
Answer: DESeq2 sizefactors counfounded with biological treatment by James W. MacDonald 67k
Your question is off-topic for this site, which is primarily intended to help people with technical issues with Bioconductor packages rathe…
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Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Answer: biomaRt has encountered an unknown server error while using getLDS
Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome
Answer: Epic v2 Annotation CpG_maf source?
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