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How to convert bedgraph.sorted or wig files to coverage files
bedgraph
.cov
wig
biseq
coverage
4.4 years ago
akhaira
• 0
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Comment: RSubread output significantly different from bash Subread output
by
Aimee
• 0
Hi Gordon, Thank you so much for this response. I went back and checked, and you are absolutely correct that it was shown in the settings b…
Answer: Can we get beta values with DMRcate package
by
James W. MacDonald
67k
If you get an error that says ``` Error in getCollapsedBetas(myAnnotation) : could not find function "getCollapsedBetas" ``` It …
Comment: What type of counts data to import for performing Isoform analysis in edgeR
by
ATpoint
★ 4.6k
I think this already happened, see https://github.com/nf-core/rnasplice/issues/162
Comment: What type of counts data to import for performing Isoform analysis in edgeR
by
Phil
▴ 10
All nf-core pipelines can be run with any additional tool CLI flags, on a per-user basis without editing any pipeline code. See docs on how…
Comment: Running multiple KNN queries in parallel
by
SamGG
▴ 360
Thank you for your detailed answer, I appreciate it and your work.
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Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: Running multiple KNN queries in parallel
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