Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
biseq
•
reset
0
votes
1
reply
595
views
Variogram-sill larger than 1, and negative p.li values in trimClusters-output
BiSeq
2.1 years ago
thomas.koefoed
• 0
0
votes
0
replies
709
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq
Methylation
DMP
DMR
RRBS
3.7 years ago
i.s.castanho
• 0
0
votes
1
reply
881
views
How to convert bedgraph.sorted or wig files to coverage files
bedgraph
.cov
wig
biseq
coverage
3.7 years ago
akhaira
• 0
0
votes
1
reply
696
views
testClusters and trimClusters error in BiSeq
BiSeq
testClusters
error
dmr
3.7 years ago
akhaira
• 0
2
votes
8
replies
873
views
Reason for NA in table after beta regression?
biseq
beta regression
3.7 years ago
akhaira
• 0
0
votes
0
replies
447
views
What values to include for predictedMethNull in BiSeq
Biseq
3.7 years ago
akhaira
• 0
2
votes
10
replies
1.1k
views
How do you use the readBismark command in BiSeq properly?
BiSeq
DMR
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
akhaira
• 0
1
vote
0
replies
549
views
Understanding ColData in BiSeq
BiSeq
Coldata
3.8 years ago
akhaira
• 0
0
votes
1
reply
597
views
Are the ordering of outputs of methylation matrix and coordinates from predictedMeth() the same?
biseq
R
methylation
3.8 years ago
AishaD
• 0
0
votes
1
reply
581
views
BiSeq - betaResults output only contains chr1 and chr2
biseq
betaRegression
RRBS
Methylation
4.0 years ago
i.s.castanho
• 0
0
votes
0
replies
707
views
Beta Regression model with wald test - BiSeq - which test is used?
BiSeq
Wald test
Beta regression
5.1 years ago
mira
• 0
0
votes
1
reply
885
views
Biseq installation error
biseq
package installation
r
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
lwh863
• 0
0
votes
0
replies
870
views
BiSeq: Read in Relative Methylation data from CCLE
biseq
ccle
5.6 years ago
spr
▴ 10
0
votes
1
reply
1.1k
views
Problem in working with BiSeq - BSraw
dna methylation
biseq
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
ahmad.moousavi
• 0
0
votes
1
reply
1.1k
views
BiSeq - modelling options betaRegression
biseq
RRBS
betaregression
7.0 years ago
l.eijssen
• 0
0
votes
3
replies
1.2k
views
BiSeq. Model beta regression on resampled data.
biseq
methylation
dmr analysis
updated 7.2 years ago by
Katja Hebestreit
▴ 130 • written 7.2 years ago by
jjalmagro
• 0
0
votes
6
replies
1.8k
views
BiSeq trimClusters error
biseq
error
trimClusters
updated 8.1 years ago by
Katja Hebestreit
▴ 130 • written 8.2 years ago by
kms68
• 0
1
vote
0
replies
1.6k
views
Multiple linear regression model for DMR detection?
methylation
linear model
dmr
bsseq
biseq
8.3 years ago
enricoferrero
▴ 660
4
votes
4
replies
1.8k
views
Unable to read data using readBismark in BiSeq
BiSeq
readBismark
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
Neel Aluru
▴ 460
1
vote
2
replies
2.5k
views
BS-seq differential methylation analysis using continuous variable
dmr
methylation
deseq2
bsseq
biseq
updated 8.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.4 years ago by
enricoferrero
▴ 660
2
votes
15
replies
2.9k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
8.9 years ago • updated 8.8 years ago
mnaymik
▴ 10
0
votes
5
replies
2.0k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq
RRBS
SAAP-BS
coverage
8.9 years ago
maria.maqueda
• 0
0
votes
3
replies
1.7k
views
BiSeq - readBismark error
BiSeq
BiSeq
updated 10.1 years ago by
David Iles
▴ 130 • written 10.1 years ago by
Hans-Ulrich Klein
▴ 330
23 results • Page
1 of 1
Recent ...
Replies
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Comment: Unable to annotate ExpressionSet object from hugene11st chip
by
Efra
• 0
I did as you told, and after running ```eset.annot <- annotateEset(eset, hugene11sttranscriptcluster.db)``` I got the next output: ``` 'se…
Comment: BioC2024 abstract submission is open!
by
howell
• 0
What are the conditions for approval of people in difficult circumstances? I want this scholarship
Comment: European Bioconductor Conference 2023 planning
by
william
• 0
[@MariaDoyle][1] Without a doubt. In that position, I will be included in the discussion. [1]: https://support.bioconductor.org/u/239…
Comment: Problem converting msigdb Human symbols to Zebrafish in gmt format
by
Georg
• 0
Thank you for the detailed response. The code worked right away. I appreciate the quick response.
Votes
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Awards
• All
Popular Question
to
rproendo
▴ 20
Popular Question
to
Wolfgang RAFFELSBERGER
▴ 140
Popular Question
to
Dario Strbenac
★ 1.5k
Scholar
to
Hervé Pagès
16k
Popular Question
to
Gordon Smyth
50k
Locations
• All
United States,
just now
United States,
11 minutes ago
United States,
21 minutes ago
United States,
45 minutes ago
The city by the bay,
56 minutes ago
Traffic: 695 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6