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AnnotationHubData
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1
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2
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564
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AnnotationHub data for Mus musculus seems to be missing, while previously it was there
tximeta
AnnotationHub
AnnotationHubData
6 months ago
Thon
• 0
0
votes
0
replies
384
views
Getting the exon co-ordinates and location
exon
AnnotationHubData
12 months ago
mahima.g
• 0
0
votes
2
replies
1.0k
views
How to fix warning in makeTxDbFromGFF() when using Gencode M30 (mouse)?
GenomicFeatures
AnnotationHubData
tximeta
updated 19 months ago by
Michael Love
41k • written 19 months ago by
Pratik Mehta
▴ 10
0
votes
13
replies
2.8k
views
EnrichGO not working with db created from annotationhub
clusterProfiler
AnnotationHubData
GO
updated 23 months ago by
Guido Hooiveld
★ 3.9k • written 23 months ago by
Lucía
▴ 10
3
votes
3
replies
1.2k
views
I can't run PhyloProfile
AnnotationHubData
PhyloProfile
24 months ago
S.t
▴ 10
3
votes
8
replies
2.5k
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData
AnnotationForge
2.0 years ago
Saber_J
▴ 10
0
votes
1
reply
628
views
a BioC/R package that display the genome sequence/ mRNA exons/protein domains
AnnotationHubData
updated 3.4 years ago by
Kevin Blighe
★ 3.9k • written 3.4 years ago by
Bogdan
▴ 670
7 results • Page
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Answer: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…
Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
James W. MacDonald
65k
You don't say what array that is, so I will guess. ``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame…
Answer: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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junhui.li11
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