Bioconductor BSGenomeForge

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cleanUpdTSeq BSgenome BSgenomeForge

updated 5.2 years ago by Julie Zhu ★ 4.3k • written 5.2 years ago by danielle.bilodeau • 0

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BSGenomeForge BSGenome

updated 3.1 years ago by Hervé Pagès 16k • written 3.1 years ago by sieminsk • 0

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BSgenomeForge BSgenome

updated 10 months ago by James W. MacDonald 65k • written 11 months ago by kyliecode • 0

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BSgenomeForge

7.6 years ago • updated 7.5 years ago Vijay Lakhujani • 0

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BSgenomeForge

7 months ago Bruno • 0

5 results • Page 1 of 1

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Comment: Cannot connect to ExperimentHub server by Jiayu • 0

Many thanks and it also resolved the same issue for me!

Comment: Help with running egsea() by Chris • 0

I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…

Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0

Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…

Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k

sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Votes

Answer: Cannot connect to ExperimentHub server

Answer: confused with tximport counts abundance using salmon input

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu

Answer: Extremely small p-values using Limma for proteomic data

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