Bioconductor BSSeq

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387

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dmrseq bsseq

updated 15 days ago by Peter Hickey ▴ 740 • written 22 days ago by Juan Higareda • 0

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157

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bsseq methylation

updated 4 weeks ago by James W. MacDonald 65k • written 4 weeks ago by ja569116 • 0

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1.1k

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bsseq

updated 8 months ago by Peter Hickey ▴ 740 • written 9 months ago by richardallenfriedmanbrooklyn ▴ 20

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2.6k

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Coverage bsseq

updated 6 months ago by Adam • 0 • written 9.7 years ago by Guest User ★ 13k

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2.5k

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bsseq Bsmooth

updated 6 months ago by Adam • 0 • written 9.2 years ago by unmeshj • 0

5 results • Page 1 of 1

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Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

You seem to have the misunderstanding that you can change the design matrix but keep all the other code unchanged. The contrasts are comput…

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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