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dmrseq
•
reset
4
votes
9
replies
695
views
Memory errors using read.bismark?
dmrseq
bsseq
3 months ago • updated 11 weeks ago
Juan Higareda
• 0
0
votes
1
reply
554
views
dmrseq and polymorphisms
dmrseq
updated 10 months ago by
keegan
▴ 60 • written 14 months ago by
giancarlo.castellano
• 0
0
votes
1
reply
809
views
dmrseq on a subset of genomic regions
dmrseq
updated 3.3 years ago by
keegan
▴ 60 • written 3.4 years ago by
KIR_F
• 0
0
votes
0
replies
954
views
Deconvolution methods from WGBS data (methylation)
methylCC
deconvolution
methylation
dmrseq
serum
4.3 years ago
marcin.bazyliszek
• 0
0
votes
1
reply
757
views
Suggestion dmrseq: generate Error when the adjustCovariate(s) generates a design that is not full rank
dmrseq
methylation
4.8 years ago
sorjuelal
• 0
0
votes
1
reply
812
views
unequal sample sizes in groups for testCovariate argument in dmrseq
dmrseq
5.0 years ago
Stephanie Hicks
▴ 80
1
vote
1
reply
1.4k
views
Using surrogate variables as covariates in WGBS differential methylation calling
dmrseq
sva
DSS
updated 5.1 years ago by
keegan
▴ 60 • written 5.1 years ago by
gjl
▴ 10
1
vote
4
replies
1.6k
views
dmrseq error: promise already under evaluation??
dmrseq
Methylation
updated 5.1 years ago by
keegan
▴ 60 • written 5.1 years ago by
sorjuelal
• 0
6
votes
5
replies
1.5k
views
dmrseq installation failed
installation problem
dmrseq
bumphunter
updated 5.7 years ago by
shepherl
3.9k • written 5.7 years ago by
guy.bioinfo
▴ 10
3
votes
16
replies
2.3k
views
Internal bug of DMR-Seq?
dmrseq
updated 5.7 years ago by
keegan
▴ 60 • written 5.8 years ago by
kuckunniwid
• 0
0
votes
3
replies
1.0k
views
DMRseq smoothed values
dmrseq
updated 5.9 years ago by
keegan
▴ 60 • written 5.9 years ago by
swebb1
• 0
0
votes
3
replies
1.3k
views
Determination of Hypo- or Hyper- methylation
dmrseq
bsseq
updated 6.2 years ago by
James W. MacDonald
66k • written 6.2 years ago by
Bruno Verstraeten
• 0
2
votes
2
replies
1.6k
views
dmrseq: cannot adjust for a covariate
dmrseq
dmr
dmrs
bisulfite
methylation
updated 6.4 years ago by
keegan
▴ 60 • written 6.5 years ago by
l.kremer
• 0
13 results • Page
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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▴ 180
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Michael Love
42k
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★ 1.1k
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