Bioconductor Dmrseq

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dmrseq bsseq

11 months ago • updated 10 months ago Juan Higareda • 0

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703

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dmrseq

updated 18 months ago by keegan ▴ 60 • written 22 months ago by giancarlo.castellano • 0

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984

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dmrseq

updated 4.0 years ago by keegan ▴ 60 • written 4.1 years ago by KIR_F • 0

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1.2k

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methylCC deconvolution methylation dmrseq serum

4.9 years ago marcin.bazyliszek • 0

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944

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dmrseq methylation

5.4 years ago sorjuelal • 0

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968

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dmrseq

5.6 years ago Stephanie Hicks ▴ 80

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1.8k

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dmrseq sva DSS

updated 5.8 years ago by keegan ▴ 60 • written 5.8 years ago by gjl ▴ 10

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2.1k

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dmrseq Methylation

updated 5.8 years ago by keegan ▴ 60 • written 5.8 years ago by sorjuelal • 0

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1.7k

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installation problem dmrseq bumphunter

updated 6.4 years ago by shepherl 4.1k • written 6.4 years ago by guy.bioinfo ▴ 10

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2.7k

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dmrseq

updated 6.4 years ago by keegan ▴ 60 • written 6.5 years ago by kuckunniwid • 0

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1.2k

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dmrseq

updated 6.6 years ago by keegan ▴ 60 • written 6.6 years ago by swebb1 • 0

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1.5k

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dmrseq bsseq

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by Bruno Verstraeten • 0

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1.8k

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dmrseq dmr dmrs bisulfite methylation

updated 7.1 years ago by keegan ▴ 60 • written 7.1 years ago by l.kremer • 0

13 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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