Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
bsseq
•
reset
4
votes
9
replies
1.0k
views
Memory errors using read.bismark?
dmrseq
bsseq
8 months ago • updated 7 months ago
Juan Higareda
• 0
0
votes
1
reply
502
views
No output from read.bismark with bismark cov.files
bsseq
methylation
updated 8 months ago by
James W. MacDonald
67k • written 8 months ago by
ja569116
• 0
6
votes
5
replies
1.7k
views
error message when I use the bsseq read.bismark command to read a genome wide cytosine report generated by bismark.
bsseq
updated 15 months ago by
Peter Hickey
▴ 740 • written 16 months ago by
richardallenfriedmanbrooklyn
▴ 30
1
vote
3
replies
2.4k
views
read.bismark() ->Error in manager$availability[[as.character(result$node)]] <- TRUE : wrong args for environment subassignment
methylSig
bsseq
updated 2.3 years ago by
Peter Hickey
▴ 740 • written 2.3 years ago by
carla.geiger
• 0
0
votes
2
replies
1.1k
views
Locating nearest genes in RRBS analysis
hiAnnotator
bsseq
DifferentialMethylation
edgeR
RRBSdata
2.6 years ago • updated 2.5 years ago
Mageiros
• 0
0
votes
1
reply
1.6k
views
Gene level methylation values
methylation
methylKit
bsseq
updated 3.2 years ago by
alex.gos90
▴ 10 • written 3.4 years ago by
Arindam
▴ 80
0
votes
0
replies
927
views
DSS smoothing RRBS and strand collapse
DSS
BSSeq
4.7 years ago
stephanie.rialle
• 0
0
votes
1
reply
926
views
Varying results from DSS when specifying different BSobj
DSS
DSS-single
bsseq
updated 5.1 years ago by
James W. MacDonald
67k • written 5.1 years ago by
varunorama
• 0
0
votes
3
replies
1.4k
views
Determination of Hypo- or Hyper- methylation
dmrseq
bsseq
updated 6.6 years ago by
James W. MacDonald
67k • written 6.6 years ago by
Bruno Verstraeten
• 0
1
vote
2
replies
1.2k
views
Request to remove requirement for gr to have widths 1 in BSseq constructor
bsseq
r
package
updated 6.6 years ago by
emmascottgm
• 0 • written 6.6 years ago by
rcavalca
▴ 140
7
votes
5
replies
2.1k
views
Strange error in bsseq when trying to assign seqinfo
bsseq
genomeinfodb
genomicranges
seqinfo
written 6.6 years ago by
rcavalca
▴ 140
0
votes
6
replies
2.1k
views
BSmooth 'names' attribute must be the same length as the vector
bsseq
bsmooth
7.1 years ago
ravi.tharakan
• 0
1
vote
6
replies
2.0k
views
Unusually long running times for getMeth function since latest release
bsseq
delayedarray
updated 7.4 years ago by
Peter Hickey
▴ 740 • written 7.5 years ago by
Alejandro Reyes
★ 1.9k
2
votes
3
replies
1.9k
views
bsseq combineList: how to get an HDF5Array-backed object as return value?
bsseq
updated 7.5 years ago by
Peter Hickey
▴ 740 • written 7.5 years ago by
Martin Aryee
▴ 20
0
votes
4
replies
2.1k
views
Error while smoothing BS-seq data with bsseq
bsseq
updated 7.6 years ago by
Nikolay.Oskolkov
• 0 • written 9.2 years ago by
andreucat91
• 0
0
votes
6
replies
2.3k
views
BSmooth error during the smoothing step for a subset of files
bsseq
bsmooth
updated 7.7 years ago by
Peter Hickey
▴ 740 • written 7.7 years ago by
brandon.le
• 0
0
votes
1
reply
1.5k
views
warning message with BSseq function
bsseq
updated 7.8 years ago by
Kasper Daniel Hansen
★ 6.5k • written 7.8 years ago by
marie.trijau
• 0
1
vote
3
replies
1.5k
views
BSmooth: mclapply error when smoothing using BSmooth
bsseq
bsmooth
7.9 years ago
zuupcat
• 0
0
votes
0
replies
1.1k
views
A few questions about BSseq package
bsseq
8.0 years ago
Stephen
• 0
0
votes
0
replies
1.2k
views
Does bsseq package work with technical replicates?
bsseq
WGBS
8.0 years ago
Welliton de Souza
▴ 70
4
votes
2
replies
1.6k
views
Bounded Regression with Limma for RRBS?
limma
rrbs
bsseq
updated 8.5 years ago by
Aaron Lun
★ 28k • written 8.5 years ago by
nhejazi
• 0
0
votes
3
replies
2.0k
views
Is there any way to set bsseq object as 'smoothed'?
bsseq
bisulfite
8.6 years ago
biohack92
• 0
1
vote
3
replies
2.1k
views
bsseq BSmooth error
bsseq
8.7 years ago
enricoferrero
▴ 660
7
votes
11
replies
4.1k
views
t-statistic cutoff for finding DMRs with bsseq
bsseq
dmr
ttest
pvalue
updated 8.8 years ago by
James W. MacDonald
67k • written 8.8 years ago by
enricoferrero
▴ 660
1
vote
0
replies
1.8k
views
Multiple linear regression model for DMR detection?
methylation
linear model
dmr
bsseq
biseq
9.0 years ago
enricoferrero
▴ 660
6
votes
14
replies
5.5k
views
How to correctly import Bismark coverage files into bsseq?
bsseq
bismark
methylation
9.0 years ago
enricoferrero
▴ 660
0
votes
0
replies
2.1k
views
Job:
Bioinformatics Data Analyst - IMP/IMBA Vienna
chipseq
atac-seq
gro-seq
bsseq
rnaseq
Job
9.1 years ago
Jaritz,Markus
▴ 20
1
vote
2
replies
2.8k
views
BS-seq differential methylation analysis using continuous variable
dmr
methylation
deseq2
bsseq
biseq
updated 9.1 years ago by
Kasper Daniel Hansen
★ 6.5k • written 9.1 years ago by
enricoferrero
▴ 660
0
votes
2
replies
2.4k
views
Issue with SummarizedExperiment thru DSS::makeBSseqData
DSS
bsseq
summarizedexperiment
9.3 years ago • updated 9.2 years ago
Tim Peters
▴ 200
0
votes
4
replies
3.0k
views
Error using Bsmooth.tstat due to NAs
Coverage
bsseq
updated 13 months ago by
Adam
• 0 • written 10.3 years ago by
Guest User
★ 13k
0
votes
3
replies
2.8k
views
How to handle BSsmooth.tstat for single replicate samples? Error: need at least two non-NA values to interpolate
bsseq
Bsmooth
updated 13 months ago by
Adam
• 0 • written 9.8 years ago by
unmeshj
• 0
0
votes
2
replies
2.1k
views
bsmooth and bsseq for RRBS
bsseq
bsseq
updated 10.9 years ago by
Tim Triche
★ 4.2k • written 10.9 years ago by
Guest User
★ 13k
1
vote
2
replies
1.6k
views
dmrFinder error
bsseq
bsseq
updated 11.1 years ago by
Kasper Daniel Hansen
★ 6.5k • written 11.1 years ago by
Guest User
★ 13k
0
votes
1
reply
1.3k
views
bsseq in devel
bsseq
bsseq
updated 11.4 years ago by
Tim Triche
★ 4.2k • written 11.4 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
2
replies
2.2k
views
bsseq and BSmooth with RRBS
Sequencing
bsseq
Sequencing
bsseq
updated 11.8 years ago by
Kasper Daniel Hansen
★ 6.5k • written 11.8 years ago by
Alex Gutteridge
▴ 650
0
votes
1
reply
1.6k
views
Minimal input data format for bsseq
Sequencing
Alignment
bsseq
Sequencing
Alignment
bsseq
updated 12.0 years ago by
Kasper Daniel Hansen
★ 6.5k • written 12.0 years ago by
Martin Aryee
▴ 20
0
votes
0
replies
1.2k
views
[package announcement] bumphunter
charm
minfi
bsseq
bumphunter
charm
minfi
bsseq
bumphunter
12.0 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
0
replies
1.6k
views
Package announcement: bsseq
Sequencing
Alignment
Cancer
Colon
bsseq
Sequencing
Alignment
Cancer
Colon
bsseq
12.4 years ago
Kasper Daniel Hansen
★ 6.5k
38 results • Page
1 of 1
Recent ...
Replies
Answer: Cannot install GO.db and org.Hs.eg.db
by
James W. MacDonald
67k
You might try tracing the namespace loading. ``` Sys.setenv("_R_TRACE_LOADNAMESPACE_"="2") install("org.Hs.eg.db") ``` And see if th…
Answer: p value is 0, padj is 0
by
James W. MacDonald
67k
It is quite possible for a very small p-value to remain very small after multiplicity adjustment. I don't know the cutoff for `DESeq2` to r…
Answer: Help using rtracklayer for gene ID extraction
by
James W. MacDonald
67k
You don't need `rtracklayer` for this (not directly anyway), but instead you need `txdbmaker` which you can use to make a `TxDb` object tha…
Answer: Feature Counts - potential bug with outfile.jcounts
by
Wei Shi
★ 3.6k
We will further develop the junction quantification module to support the use of user-provided annotation data for annotating detected junc…
Comment: Pre-filtering TPM kallisto for ssGSEA / DESeq2
by
georgii.vdovin
• 0
Thank you!
Votes
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Awards
• All
Popular Question
to
giulia.gentile
▴ 10
Popular Question
to
mat149
▴ 80
Popular Question
to
Yang Shi
▴ 10
Popular Question
to
shepherl
4.1k
Popular Question
to
georgii.vdovin
• 0
Locations
• All
United States,
just now
United States,
1 minute ago
United States,
6 minutes ago
United States,
6 minutes ago
Canada,
16 minutes ago
Traffic: 713 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6