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BayesPeak
•
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0
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880
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak
bug
7.8 years ago
balwierz
▴ 40
1
vote
3
replies
1.2k
views
Error in bayespeak function importing data
bayespeak
8.8 years ago
Reed
▴ 10
8
votes
9
replies
6.2k
views
ChIPseq-style peak calling for paired-end sequencing?
Chipseq
DNAseq
ATAC
bayespeak
narrowpeaks
updated 9.1 years ago by
Gordon Smyth
51k • written 9.1 years ago by
samuel collombet
▴ 140
0
votes
8
replies
2.0k
views
chip-seq data
ChIPSeq
chipseq
BayesPeak
ChIPSeq
chipseq
BayesPeak
11.8 years ago
John linux-user
▴ 210
0
votes
1
reply
1.1k
views
Question about ChIPpeakAnno R package
AnnotationData
annotate
ChIPpeakAnno
BayesPeak
AnnotationData
annotate
ChIPpeakAnno
11.9 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
985
views
Upgrade bioconductor to version 2.6
BayesPeak
BayesPeak
12.8 years ago
Mary Ellen Fitzpatrick
▴ 20
0
votes
7
replies
1.9k
views
error in bayespeak function
ChIPSeq
GO
BSgenome
BSgenome
chipseq
BayesPeak
ChIPSeq
GO
BSgenome
BSgenome
chipseq
updated 12.9 years ago by
Jonathan Cairns
▴ 130 • written 12.9 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
1.0k
views
BayesPeak and RangedData obj output
BayesPeak
BayesPeak
updated 13.6 years ago by
Jonathan Cairns
▴ 130 • written 13.6 years ago by
Binbin Liu
▴ 30
0
votes
4
replies
1.7k
views
BayesPeak segfault woes
BayesPeak
BayesPeak
updated 14.0 years ago by
Jonathan Cairns
▴ 130 • written 14.0 years ago by
Tim Rayner
▴ 270
9 results • Page
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Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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swbarnes2
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Stephanie M. Gogarten
▴ 870
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Jonathan
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Frederico Moraes Ferreira
▴ 100
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