Showing : BayesPeak • reset
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak bug
9.2 years ago balwierz ▴ 40
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1.5k
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Error in bayespeak function importing data
bayespeak
10.2 years ago Reed ▴ 10
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9
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7.2k
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ChIPseq-style peak calling for paired-end sequencing?
Chipseq DNAseq ATAC bayespeak narrowpeaks
updated 10.4 years ago by 53k • written 10.4 years ago by ▴ 140
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8
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chip-seq data
ChIPSeq chipseq BayesPeak ChIPSeq chipseq BayesPeak
13.1 years ago John linux-user ▴ 210
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1.4k
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Question about ChIPpeakAnno R package
AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno
13.2 years ago Julie Zhu ★ 4.3k
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Upgrade bioconductor to version 2.6
BayesPeak BayesPeak
14.1 years ago Mary Ellen Fitzpatrick ▴ 20
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error in bayespeak function
ChIPSeq GO BSgenome BSgenome chipseq BayesPeak ChIPSeq GO BSgenome BSgenome chipseq
updated 14.2 years ago by ▴ 130 • written 14.2 years ago by ▴ 810
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1.3k
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BayesPeak and RangedData obj output
BayesPeak BayesPeak
updated 14.9 years ago by ▴ 130 • written 14.9 years ago by ▴ 30
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4
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2.1k
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BayesPeak segfault woes
BayesPeak BayesPeak
updated 15.4 years ago by ▴ 130 • written 15.4 years ago by ▴ 270
9 results • Page 1 of 1
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Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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