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BayesPeak
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak
bug
8.3 years ago
balwierz
▴ 40
1
vote
3
replies
1.3k
views
Error in bayespeak function importing data
bayespeak
9.3 years ago
Reed
▴ 10
8
votes
9
replies
6.6k
views
ChIPseq-style peak calling for paired-end sequencing?
Chipseq
DNAseq
ATAC
bayespeak
narrowpeaks
updated 9.5 years ago by
Gordon Smyth
51k • written 9.5 years ago by
samuel collombet
▴ 140
0
votes
8
replies
2.2k
views
chip-seq data
ChIPSeq
chipseq
BayesPeak
ChIPSeq
chipseq
BayesPeak
12.2 years ago
John linux-user
▴ 210
0
votes
1
reply
1.2k
views
Question about ChIPpeakAnno R package
AnnotationData
annotate
ChIPpeakAnno
BayesPeak
AnnotationData
annotate
ChIPpeakAnno
12.3 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.1k
views
Upgrade bioconductor to version 2.6
BayesPeak
BayesPeak
13.2 years ago
Mary Ellen Fitzpatrick
▴ 20
0
votes
7
replies
2.0k
views
error in bayespeak function
ChIPSeq
GO
BSgenome
BSgenome
chipseq
BayesPeak
ChIPSeq
GO
BSgenome
BSgenome
chipseq
updated 13.4 years ago by
Jonathan Cairns
▴ 130 • written 13.4 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
1.1k
views
BayesPeak and RangedData obj output
BayesPeak
BayesPeak
updated 14.0 years ago by
Jonathan Cairns
▴ 130 • written 14.0 years ago by
Binbin Liu
▴ 30
0
votes
4
replies
1.8k
views
BayesPeak segfault woes
BayesPeak
BayesPeak
updated 14.5 years ago by
Jonathan Cairns
▴ 130 • written 14.5 years ago by
Tim Rayner
▴ 270
9 results • Page
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Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
by
James W. MacDonald
67k
This support site is meant to help people with technical questions about using Bioconductor packages. Your question is probably better suit…
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
Paul
• 0
This is the traceback I got after running AddMotifs if this is informative? ``` 23: stop(wmsg("trying to load regions beyond the boundaries…
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
James W. MacDonald
67k
You will probably have to ask the Signac people. I don't know exactly what is going on under the hood for `AddMotif`, but the `EnsDb` seems…
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
Paul
• 0
Unfortunately I've updated my code with the newest GRCm39 genome, and yet I am still getting the same error.... Is there anything else I ca…
Comment: WGCNA with TPM tables
by
ATpoint
★ 4.5k
WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …
Votes
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Comment: does anyone how to create rarefaction curves from a phyloseq object?
Answer: ANOVA like approach of edgeR
A: ANOVA-like test with edgeR
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